##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781138_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 124573 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.11260867122089 34.0 34.0 34.0 31.0 34.0 2 33.169442816661714 34.0 34.0 34.0 32.0 34.0 3 33.240638019474524 34.0 34.0 34.0 32.0 34.0 4 33.32003724723656 34.0 34.0 34.0 33.0 34.0 5 33.31523684907644 34.0 34.0 34.0 33.0 34.0 6 36.57941929631622 38.0 37.0 38.0 34.0 38.0 7 36.47062365038973 38.0 37.0 38.0 34.0 38.0 8 36.199168359114736 38.0 37.0 38.0 34.0 38.0 9 36.20758912444912 38.0 37.0 38.0 34.0 38.0 10-11 36.12343364934617 38.0 37.0 38.0 32.5 38.0 12-13 36.07031620013968 38.0 37.0 38.0 32.0 38.0 14-15 36.09867708090838 38.0 37.0 38.0 32.0 38.0 16-17 36.019362141073906 38.0 36.0 38.0 32.0 38.0 18-19 36.02199513538247 38.0 36.0 38.0 32.0 38.0 20-21 35.961343950936396 38.0 36.0 38.0 32.0 38.0 22-23 36.01855939890667 38.0 36.0 38.0 32.0 38.0 24-25 36.037291387379284 38.0 36.0 38.0 32.0 38.0 26-27 35.806017355285654 38.0 36.0 38.0 31.5 38.0 28-29 35.749187223555666 38.0 36.0 38.0 31.0 38.0 30-31 35.79514822634118 38.0 36.0 38.0 31.0 38.0 32-33 35.74935981312162 38.0 36.0 38.0 31.0 38.0 34-35 35.758466923008996 38.0 36.0 38.0 31.0 38.0 36-37 35.70591942074125 38.0 36.0 38.0 31.0 38.0 38-39 35.69155434965843 38.0 36.0 38.0 31.0 38.0 40-41 35.7092708692895 38.0 36.0 38.0 31.0 38.0 42-43 35.6935893010524 38.0 36.0 38.0 31.0 38.0 44-45 35.66914580205984 38.0 36.0 38.0 31.0 38.0 46-47 35.69298323071612 38.0 36.0 38.0 31.0 38.0 48-49 35.68101835871336 38.0 36.0 38.0 31.0 38.0 50-51 35.56696876530227 38.0 36.0 38.0 31.0 38.0 52-53 35.594908206433175 38.0 36.0 38.0 31.0 38.0 54-55 35.601735528565584 38.0 36.0 38.0 31.0 38.0 56-57 35.546177743170674 38.0 36.0 38.0 31.0 38.0 58-59 35.57200195869089 38.0 36.0 38.0 31.0 38.0 60-61 35.542208183153654 38.0 36.0 38.0 31.0 38.0 62-63 35.528702046189785 38.0 36.0 38.0 31.0 38.0 64-65 35.46109911457539 38.0 36.0 38.0 31.0 38.0 66-67 35.48458735038893 38.0 36.0 38.0 31.0 38.0 68-69 35.416085347547224 38.0 36.0 38.0 31.0 38.0 70-71 35.37844476732518 38.0 36.0 38.0 31.0 38.0 72-73 35.336328899520765 38.0 36.0 38.0 30.5 38.0 74-75 35.36481019161455 38.0 36.0 38.0 31.0 38.0 76 34.46233132380211 37.0 34.0 38.0 26.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 7.0 22 17.0 23 38.0 24 92.0 25 182.0 26 397.0 27 656.0 28 1180.0 29 1866.0 30 3001.0 31 4289.0 32 6163.0 33 8583.0 34 11619.0 35 15712.0 36 23495.0 37 47275.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.69230089987397 18.68382394258788 9.197819752273768 25.426055405264382 2 23.600619716953112 21.154664333362767 30.89754601719474 24.347169932489386 3 20.119126937618905 22.915077906127333 29.816252317918007 27.149542838335755 4 13.864159970459088 17.367326788308862 37.41260144654139 31.355911794690662 5 13.20109494031612 35.07822722419786 36.44208616634423 15.27859166914179 6 30.114872404132516 38.48907869281465 18.070528926813996 13.32551997623883 7 28.695624252446354 30.580462861133633 21.773578544307355 18.950334342112658 8 25.460573318455843 36.033490403217385 19.337256066723928 19.168680211602833 9 24.60404742600724 16.0981914218972 20.691482102863382 38.60627904923218 10-11 24.617292671766755 25.425654034180763 28.21518306535124 21.741870228701245 12-13 24.693151806571247 23.430037006413908 27.572186589389354 24.304624597625487 14-15 22.64816613551893 24.47440456599745 24.48042513225177 28.39700416623185 16-17 23.200452746582325 28.284620262817782 25.37146893789184 23.143458052708052 18-19 22.656594928274988 27.800165364886453 26.663081084986313 22.88015862185225 20-21 22.33389257704318 27.47545615823654 26.596854856188738 23.593796408531546 22-23 22.55785764170406 27.243865042986844 27.19891148162122 22.999365833687875 24-25 22.84242973999181 27.317717322373227 26.867780337633356 22.972072600001606 26-27 22.085443876281378 27.85515320334262 27.21416358279884 22.845239337577166 28-29 22.15889478458414 27.010668443402665 27.843914813001213 22.986521959011984 30-31 22.512904080338437 27.09736459746494 27.595064741155788 22.794666581040836 32-33 22.293354097597394 27.36949419216042 27.161583970844404 23.17556773939778 34-35 22.613246851243847 26.91514212550071 27.379528469250964 23.092082554004477 36-37 23.10211683109502 27.456190346222698 26.72047714994421 22.721215672738072 38-39 22.05213007634078 27.55693448821173 27.749592608350127 22.641342827097365 40-41 22.184582533935927 26.87179404846957 28.19872685092275 22.744896566671752 42-43 22.82195981472711 26.80075136666854 27.72671445658369 22.650574362020663 44-45 21.861077440536874 27.308084416366306 27.799362622719208 23.031475520377608 46-47 22.272884172332688 26.773056761898644 27.674134844629254 23.27992422113941 48-49 21.97386271503456 26.75700191855378 27.975163157345488 23.29397220906617 50-51 21.89960906456455 26.85172549428849 28.102397790853555 23.146267650293403 52-53 21.61222736869145 26.47443667568414 28.878649466577833 23.03468648904658 54-55 21.425188443723762 26.65866600306647 28.44356321193196 23.472582341277807 56-57 21.446059740072087 26.631372769380203 28.138922559463126 23.783644931084584 58-59 21.185569906801636 26.485675066025543 28.80840952694404 23.520345500228782 60-61 21.466931036420412 26.811588385926328 28.190699429250323 23.530781148402944 62-63 20.50925963089915 27.307281674199064 28.473666043203583 23.7097926516982 64-65 20.88052788324918 27.54970980870654 27.66329782537147 23.90646448267281 66-67 20.684658794441813 27.21215672738073 27.554927632793625 24.548256845383833 68-69 20.53534875133456 27.67694444221461 27.460204057058913 24.327502749391922 70-71 21.19440007064131 27.324942001878416 27.186067606945326 24.294590320534947 72-73 20.986088478241673 26.515777897297166 27.09013991795975 25.407993706501408 74-75 20.770150835253226 26.92919011342747 26.994212228974174 25.30644682234513 76 21.360969070344296 26.492899745530735 26.75700191855378 25.389129265571192 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 2.5 14 3.5 15 9.5 16 27.0 17 38.0 18 59.5 19 109.0 20 189.0 21 241.0 22 292.5 23 402.0 24 594.5 25 729.0 26 805.5 27 984.5 28 1261.0 29 1435.0 30 1635.5 31 1989.0 32 2502.5 33 2863.0 34 3090.5 35 3605.0 36 4251.5 37 4611.0 38 4895.0 39 5657.5 40 6421.0 41 6877.5 42 7049.0 43 7139.0 44 7368.0 45 7406.5 46 7306.0 47 7251.0 48 6750.5 49 5978.0 50 5651.0 51 5187.0 52 4318.5 53 3826.0 54 3738.0 55 3500.5 56 2966.5 57 2430.5 58 2191.0 59 1993.5 60 1655.5 61 1373.0 62 1231.0 63 1167.0 64 1026.0 65 897.0 66 834.0 67 823.0 68 759.0 69 714.5 70 707.0 71 680.0 72 660.5 73 585.5 74 491.5 75 453.0 76 439.5 77 385.5 78 310.0 79 275.0 80 246.0 81 187.0 82 141.0 83 125.0 84 88.5 85 45.5 86 34.0 87 29.0 88 24.0 89 14.0 90 5.0 91 0.5 92 0.0 93 0.5 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 124573.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.90580623409567 #Duplication Level Percentage of deduplicated Percentage of total 1 70.71879115547239 40.950286177582626 2 17.216330491439663 19.938509949989164 3 5.387121369654121 9.358368185722428 4 2.1626117695986693 5.0091111235982115 5 1.0466486449019201 3.030351681343469 6 0.761072988147224 2.6442326988994407 7 0.5697650239134955 2.309489215158983 8 0.4034102724059056 1.8687837653424098 9 0.30914257988493793 1.6111035296573095 >10 1.4181742566022042 12.571745081197369 >50 0.005545158383586331 0.21031844781774545 >100 0.0 0.0 >500 0.0013862895958965827 0.4977001436908479 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCCTCGCAGATCTCGTATGCCGT 620 0.4977001436908479 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0016054843344866063 0.0 10 0.0 0.0 0.0 0.0016054843344866063 0.0 11 0.0 0.0 0.0 0.0016054843344866063 0.0 12 0.0 0.0 0.0 0.0016054843344866063 0.0 13 0.0 0.0 0.0 0.0016054843344866063 0.0 14 0.0 0.0 0.0 0.0016054843344866063 0.0 15 0.0 0.0 0.0 0.0016054843344866063 0.0 16 0.0 0.0 0.0 0.0016054843344866063 0.0 17 0.0 0.0 0.0 0.0016054843344866063 0.0 18 0.0 0.0 0.0 0.002408226501729909 0.0 19 0.0 0.0 0.0 0.002408226501729909 0.0 20 0.0 0.0 0.0 0.0032109686689732126 0.0 21 0.0 0.0 0.0 0.0032109686689732126 0.0 22 0.0 0.0 0.0 0.0032109686689732126 0.0 23 0.0 0.0 0.0 0.0032109686689732126 0.0 24 0.0 0.0 0.0 0.0040137108362165155 0.0 25 0.0 0.0 0.0 0.004816453003459818 0.0 26 0.0 0.0 0.0 0.005619195170703122 0.0 27 0.0 0.0 0.0 0.008027421672433031 0.0 28 0.0 0.0 0.0 0.014449359010379456 0.0 29 0.0 0.0 0.0 0.016857585512109367 0.0 30 0.0 0.0 0.0 0.02087129634832588 0.0 31 0.0 0.0 0.0 0.032109686689732124 0.0 32 0.0 0.0 0.0 0.04977001436908479 0.0 33 0.0 0.0 0.0 0.06823308421568076 0.0 34 0.0 0.0 0.0 0.08268244322606022 0.0 35 0.0 0.0 0.0 0.12121406725373877 0.0 36 0.0 0.0 0.0 0.17419505029179677 0.0 37 0.0 0.0 0.0 0.256877493517857 0.0 38 0.0 0.0 0.0 0.3516010692525668 0.0 39 0.0 0.0 0.0 0.48003981601149526 0.0 40 0.0 0.0 0.0 0.627744374784263 0.0 41 0.0 0.0 0.0 0.7923065190691402 0.0 42 0.0 0.0 0.0 0.9721207645316401 0.0 43 0.0 0.0 0.0 1.2217735785443073 0.0 44 0.0 0.0 0.0 1.5115635009191397 0.0 45 0.0 0.0 0.0 1.8414905316561374 0.0 46 0.0 0.0 0.0 2.1971053117449206 0.0 47 0.0 0.0 0.0 2.616136723045925 0.0 48 0.0 0.0 0.0 3.00626941632617 0.0 49 0.0 0.0 0.0 3.424498085459931 0.0 50 0.0 0.0 0.0 3.80820884140223 0.0 51 0.0 0.0 0.0 4.129305708299551 0.0 52 0.0 0.0 0.0 4.507397269071147 0.0 53 0.0 0.0 0.0 4.900740931020366 0.0 54 0.0 0.0 0.0 5.30291475680926 0.0 55 0.0 0.0 0.0 5.719537941608535 0.0 56 0.0 0.0 0.0 6.184325656442407 0.0 57 0.0 0.0 0.0 6.63948046526936 0.0 58 0.0 0.0 0.0 7.109887375273936 0.0 59 0.0 0.0 0.0 7.518483138400777 0.0 60 0.0 0.0 0.0 7.983270853234649 0.0 61 0.0 0.0 0.0 8.427187271720197 0.0 62 0.0 0.0 0.0 8.82695287100736 0.0 63 0.0 0.0 0.0 9.225915728127283 0.0 64 0.0 0.0 0.0 9.685084247790453 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGC 135 0.0 57.037037 41 TATGCCG 135 0.0 57.037037 43 CGTCTTC 130 0.0 56.53846 48 TCGTATG 130 0.0 56.53846 40 CCGTCTT 140 0.0 55.0 47 ATGCCGT 140 0.0 55.0 44 CTCGTAT 135 0.0 54.444443 39 TGCCGTC 145 0.0 53.103447 45 ACGTTTA 20 0.0069375657 52.5 26 TAACGCT 20 0.0069375657 52.5 4 CTGCGGT 20 0.0069375657 52.5 30 CGGTCGT 20 0.0069375657 52.5 10 CTTACGT 20 0.0069375657 52.5 23 CTTACGC 20 0.0069375657 52.5 3 TCTCGTA 100 0.0 52.499996 38 GCCGTCT 150 0.0 51.333332 46 TCGCAGA 145 0.0 50.689655 31 ATCTCGT 100 0.0 48.999996 37 CGCAGAT 110 0.0 47.727272 32 CCTCGCA 165 0.0 46.666668 29 >>END_MODULE