##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781136_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 79367 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50956946841887 34.0 34.0 34.0 31.0 34.0 2 32.52044300527927 34.0 34.0 34.0 31.0 34.0 3 32.45631055728451 34.0 34.0 34.0 31.0 34.0 4 32.56832184661131 34.0 34.0 34.0 31.0 34.0 5 32.62544886413749 34.0 34.0 34.0 31.0 34.0 6 35.745158567162676 38.0 37.0 38.0 31.0 38.0 7 35.708191061776304 38.0 37.0 38.0 31.0 38.0 8 35.55712071767863 38.0 37.0 38.0 31.0 38.0 9 35.894162561266015 38.0 37.0 38.0 32.0 38.0 10-11 35.78923230057833 38.0 37.0 38.0 31.0 38.0 12-13 35.728136379099624 38.0 37.0 38.0 31.0 38.0 14-15 35.68793705192334 38.0 37.0 38.0 31.0 38.0 16-17 35.642641148084216 38.0 37.0 38.0 31.0 38.0 18-19 35.667909836581956 38.0 37.0 38.0 31.0 38.0 20-21 35.65377297869392 38.0 37.0 38.0 31.0 38.0 22-23 35.692787934531985 38.0 37.0 38.0 31.0 38.0 24-25 35.68936081746821 38.0 37.0 38.0 31.0 38.0 26-27 35.621530358965316 38.0 37.0 38.0 31.0 38.0 28-29 35.709243136316104 38.0 37.0 38.0 31.0 38.0 30-31 35.776386911436745 38.0 37.0 38.0 31.0 38.0 32-33 35.724224173775 38.0 37.0 38.0 31.0 38.0 34-35 35.75114972217672 38.0 37.0 38.0 31.0 38.0 36-37 35.67402068869933 38.0 37.0 38.0 31.0 38.0 38-39 35.668061032923006 38.0 37.0 38.0 31.0 38.0 40-41 35.640518099462 38.0 37.0 38.0 31.0 38.0 42-43 35.72162233673945 38.0 37.0 38.0 31.0 38.0 44-45 35.72277520883995 38.0 37.0 38.0 31.0 38.0 46-47 35.69271863620901 38.0 37.0 38.0 31.0 38.0 48-49 35.66748144694898 38.0 37.0 38.0 31.0 38.0 50-51 35.55468897652677 38.0 36.5 38.0 31.0 38.0 52-53 35.61681177315509 38.0 37.0 38.0 31.0 38.0 54-55 35.60329230032633 38.0 37.0 38.0 31.0 38.0 56-57 35.55159575138282 38.0 37.0 38.0 31.0 38.0 58-59 35.5505121776053 38.0 37.0 38.0 31.0 38.0 60-61 35.55715221691635 38.0 37.0 38.0 31.0 38.0 62-63 35.536709211637074 38.0 36.5 38.0 31.0 38.0 64-65 35.55351720488365 38.0 37.0 38.0 31.0 38.0 66-67 35.457967417188506 38.0 36.0 38.0 31.0 38.0 68-69 35.18625499262917 38.0 36.0 38.0 28.0 38.0 70-71 35.39347587788376 38.0 36.0 38.0 30.5 38.0 72-73 35.417642093061346 38.0 36.0 38.0 31.0 38.0 74-75 35.42239847795683 38.0 36.0 38.0 30.5 38.0 76 34.17597994128542 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 13 11.0 14 47.0 15 83.0 16 172.0 17 276.0 18 322.0 19 307.0 20 321.0 21 309.0 22 278.0 23 312.0 24 406.0 25 440.0 26 551.0 27 713.0 28 816.0 29 1004.0 30 1310.0 31 1750.0 32 2370.0 33 3178.0 34 4570.0 35 7181.0 36 13871.0 37 38769.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.81416709715625 17.959605377549863 9.120919273753575 26.10530825154031 2 24.04903801328008 20.061234518124664 30.449683117668553 25.440044350926705 3 20.03855506696738 21.25946552093439 28.521929769299582 30.180049642798647 4 14.175916942809986 16.048231632794487 35.938110297730795 33.83774112666473 5 14.002041150604155 33.46479015207832 35.71005581664924 16.823112880668287 6 30.9335114090239 36.25688258344148 18.051583151687726 14.758022855846889 7 29.64960247961999 28.797863091713182 21.516499300716923 20.0360351279499 8 26.15444706238109 33.52022881046279 19.309032721408144 21.01629140574798 9 24.91841697430922 15.262010659342042 20.48080436453438 39.33876800181436 10-11 25.971751483614096 23.79200423349755 26.958307608955863 23.27793667393249 12-13 25.98750110247332 22.050096387667416 26.059319364471378 25.903083145387885 14-15 23.89154182468784 23.264077009336372 23.46882205450628 29.375559111469503 16-17 24.49947711265387 26.210515705519928 24.43521866770824 24.85478851411796 18-19 23.82728337974221 25.933322413597594 25.661798984464575 24.577595222195622 20-21 23.628838182115995 25.99884082805196 25.69644814595487 24.67587284387718 22-23 23.9898194463694 25.489813146521854 26.23193518716847 24.28843221994028 24-25 23.639547922940267 25.87914372472186 25.72605742941021 24.755250922927665 26-27 22.86718661408394 26.083888769891768 26.36612193984906 24.682802676175235 28-29 23.780034523164538 25.46398377159273 26.93562815779858 23.82035354744415 30-31 23.943200574546093 25.48666322275001 26.28044401325488 24.289692189449017 32-33 23.246437436214045 26.189726208625753 26.088928647926718 24.474907707233484 34-35 24.22732369876649 25.324757140877193 26.36360200083158 24.08431715952474 36-37 24.31174165585193 24.965035846132526 25.993170965262642 24.73005153275291 38-39 23.446142603349 25.961041742789824 26.32517293081507 24.2676427230461 40-41 23.61749845653735 25.190570388196605 26.87199969760732 24.319931457658726 42-43 23.501581261733467 25.394685448612144 26.52361812844129 24.580115161213097 44-45 23.032242619728603 25.543361850643215 26.43479027807527 24.989605251552913 46-47 23.262187055073266 25.28317814708884 26.74411279247042 24.71052200536747 48-49 23.11288066828783 25.10489246160243 27.037685688006352 24.744541182103394 50-51 22.697090730404323 25.30207768971991 26.990436831428678 25.01039474844709 52-53 22.661811584159665 25.41295500648884 27.22101125152771 24.70422215782378 54-55 22.251061524311112 25.406655158945153 27.257550367281112 25.084732949462623 56-57 21.81007219625285 25.418624869278162 27.38858719618985 25.38271573827913 58-59 22.64039210251112 25.305227613491756 26.957047639447122 25.09733264455 60-61 22.045056509632467 25.24222913805486 26.94696788337722 25.76574646893545 62-63 21.508939483664495 24.992755175324756 27.597112149885973 25.901193191124776 64-65 22.201292728715966 25.551551652450012 27.002406541761694 25.24474907707234 66-67 22.153413887383923 25.13828165358398 26.747262716242265 25.961041742789824 68-69 22.24539166152179 25.111822293900488 26.454319805460706 26.188466239117012 70-71 22.47281615784898 25.281918177580103 26.76301233510149 25.48225332946943 72-73 22.718510212052866 24.806279688031548 26.483299104161677 25.9919109957539 74-75 22.511245227865487 25.11056232439175 26.37620169591896 26.001990751823804 76 22.88482618720627 24.666423072561646 26.45179986644323 25.996950873788855 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.5 6 0.5 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 1.0 15 2.5 16 6.0 17 9.0 18 17.5 19 26.5 20 41.5 21 56.0 22 71.5 23 115.5 24 170.5 25 197.0 26 228.5 27 317.0 28 455.0 29 536.0 30 623.0 31 832.0 32 1167.5 33 1381.0 34 1489.5 35 1834.0 36 2315.0 37 2560.0 38 2782.0 39 3368.5 40 4025.0 41 4419.0 42 4521.0 43 4638.0 44 4724.0 45 4665.5 46 4638.0 47 4628.5 48 4346.0 49 3911.5 50 3750.0 51 3434.0 52 2736.5 53 2267.5 54 2180.0 55 1959.0 56 1645.5 57 1428.5 58 1304.0 59 1163.0 60 961.5 61 859.0 62 817.0 63 806.5 64 800.0 65 822.0 66 879.0 67 918.0 68 917.0 69 910.5 70 909.5 71 914.0 72 933.5 73 897.5 74 810.0 75 778.0 76 733.5 77 623.0 78 500.0 79 443.0 80 379.0 81 274.5 82 183.0 83 132.0 84 111.5 85 80.5 86 52.5 87 35.0 88 29.5 89 18.0 90 8.5 91 4.0 92 3.0 93 1.5 94 2.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 79367.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.93591795078559 #Duplication Level Percentage of deduplicated Percentage of total 1 74.16162846331173 42.966220217470735 2 13.237788699926059 15.338868799375055 3 4.597451176547344 7.990726624415689 4 2.3748423296072376 5.503546814167097 5 1.4766647818711671 4.277596482165132 6 0.956896176764821 3.326319503068026 7 0.6850506720020878 2.778232766767044 8 0.5436910095254665 2.5199390174757768 9 0.4175546953155583 2.1772273110990716 >10 1.5462572310904266 13.05706401905074 >50 0.002174764038101866 0.06425844494563232 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 0.002519939017475777 0.0 22 0.0 0.0 0.0 0.006299847543689442 0.0 23 0.0 0.0 0.0 0.006299847543689442 0.0 24 0.0 0.0 0.0 0.010079756069903108 0.0 25 0.0 0.0 0.0 0.010079756069903108 0.0 26 0.0 0.0 0.0 0.010079756069903108 0.0 27 0.0 0.0 0.0 0.020159512139806216 0.0 28 0.0 0.0 0.0 0.02519939017475777 0.0 29 0.0 0.0 0.0 0.03401917673592299 0.0 30 0.0 0.0 0.0 0.04661887182330188 0.0 31 0.0 0.0 0.0 0.05417868887572921 0.0 32 0.0 0.0 0.0 0.07055829248932176 0.0 33 0.0 0.0 0.0 0.09575768266407952 0.0 34 0.0 0.0 0.0 0.13481673743495406 0.0 35 0.0 0.0 0.0 0.19025539581942116 0.0 36 0.0 0.0 0.0 0.2734133833961218 0.0 37 0.0 0.0 0.0 0.4107500598485517 0.0 38 0.0 0.0 0.0 0.5758060654932151 0.0 39 0.0 0.0 0.0 0.7975606990310834 0.0 40 0.0 0.0 0.0 1.0268751496213793 0.0 41 0.0 0.0 0.0 1.2700492648077917 0.0 42 0.0 0.0 0.0 1.5359028311514862 0.0 43 0.0 0.0 0.0 1.8584550253883856 0.0 44 0.0 0.0 0.0 2.238965817027228 0.0 45 0.0 0.0 0.0 2.6635755414718965 0.0 46 0.0 0.0 0.0 3.14488389380977 0.0 47 0.0 0.0 0.0 3.661471392392304 0.0 48 0.0 0.0 0.0 4.185618708027266 0.0 49 0.0 0.0 0.0 4.731185505310772 0.0 50 0.0 0.0 0.0 5.17973465042146 0.0 51 0.0 0.0 0.0 5.606864313883604 0.0 52 0.0 0.0 0.0 6.0428137639069135 0.0 53 0.0 0.0 0.0 6.490102939508864 0.0 54 0.0 0.0 0.0 6.9814910479166405 0.0 55 0.0 0.0 0.0 7.501858455025388 0.0 56 0.0 0.0 0.0 8.057505008378797 0.0 57 0.0 0.0 0.0 8.577872415487546 0.0 58 0.0 0.0 0.0 9.146118663928332 0.0 59 0.0 0.0 0.0 9.590887900512808 0.0 60 0.0 0.0 0.0 10.122595033200197 0.0 61 0.0 0.0 0.0 10.640442501291469 0.0 62 0.0 0.0 0.0 11.184749329066237 0.0 63 0.0 0.0 0.0 11.700076858140033 0.0 64 0.0 0.0 0.0 12.201544722617713 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAGGTTG 15 0.0022172583 70.0 31 TAATACA 25 2.3774494E-4 56.000004 4 TGGAGGC 20 0.0069283284 52.5 13 GCTGTCC 20 0.0069283284 52.5 8 TGTCCCC 20 0.0069283284 52.5 10 TATCTAT 35 0.0012487185 39.999996 35 CCAGTCA 35 0.0012487185 39.999996 14 GGCTTAA 45 0.004284564 31.111109 23 TGACAAC 45 0.004284564 31.111109 39 TTCTCAG 45 0.004284564 31.111109 56 CATACAC 60 4.94309E-4 29.166666 3 TATACCA 60 4.94309E-4 29.166666 10 ACTGATT 50 0.0071706166 28.000002 42 CCCTAGA 50 0.0071706166 28.000002 69 GTAATAC 50 0.0071706166 28.000002 3 GCCTACA 50 0.0071706166 28.000002 1 AATACCC 50 0.0071706166 28.000002 5 AGATGTG 50 0.0071706166 28.000002 5 ATACCCA 65 7.893867E-4 26.923079 6 CTATACT 80 8.571271E-5 26.25 4 >>END_MODULE