##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781136_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 74796 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.94657468313814 34.0 34.0 34.0 31.0 34.0 2 32.95585325418472 34.0 34.0 34.0 31.0 34.0 3 33.05588534146211 34.0 34.0 34.0 31.0 34.0 4 33.1834322691053 34.0 34.0 34.0 32.0 34.0 5 33.1454088453928 34.0 34.0 34.0 32.0 34.0 6 36.28294293812503 38.0 37.0 38.0 34.0 38.0 7 36.14855072463768 38.0 36.0 38.0 32.0 38.0 8 35.83881490988823 38.0 36.0 38.0 31.0 38.0 9 35.86274667094497 38.0 36.0 38.0 31.0 38.0 10-11 35.75093587892401 38.0 36.0 38.0 31.0 38.0 12-13 35.69874725921172 38.0 36.0 38.0 31.0 38.0 14-15 35.70204288999412 38.0 36.0 38.0 31.0 38.0 16-17 35.635488528798334 38.0 36.0 38.0 31.0 38.0 18-19 35.63528798331461 38.0 36.0 38.0 31.0 38.0 20-21 35.55275683191614 38.0 36.0 38.0 31.0 38.0 22-23 35.62056794480988 38.0 36.0 38.0 31.0 38.0 24-25 35.59519894111985 38.0 36.0 38.0 31.0 38.0 26-27 35.34929006898765 38.0 36.0 38.0 31.0 38.0 28-29 35.28047622867533 38.0 36.0 38.0 31.0 38.0 30-31 35.31966950104284 38.0 36.0 38.0 31.0 38.0 32-33 35.23359537943205 38.0 35.5 38.0 30.0 38.0 34-35 35.25362987325526 38.0 35.5 38.0 30.0 38.0 36-37 35.21121450344938 37.5 35.0 38.0 29.0 38.0 38-39 35.162034065992835 37.5 35.0 38.0 27.5 38.0 40-41 35.20741082410824 37.0 35.0 38.0 28.5 38.0 42-43 35.18049093534414 37.0 35.0 38.0 28.0 38.0 44-45 35.138316220118725 37.0 35.0 38.0 27.0 38.0 46-47 35.18212872346115 37.0 35.0 38.0 27.5 38.0 48-49 35.14374431787796 37.0 35.0 38.0 27.0 38.0 50-51 35.05109898925076 37.0 35.0 38.0 27.0 38.0 52-53 35.06943553131184 37.0 35.0 38.0 27.0 38.0 54-55 35.09787288090272 37.0 35.0 38.0 27.0 38.0 56-57 35.01737392373924 37.0 35.0 38.0 27.0 38.0 58-59 35.01147120166854 37.0 35.0 38.0 27.0 38.0 60-61 35.00411118241617 37.0 35.0 38.0 27.0 38.0 62-63 34.965111770682924 37.0 35.0 38.0 27.0 38.0 64-65 34.90845767153324 37.0 35.0 38.0 27.0 38.0 66-67 34.89284186320124 37.0 35.0 38.0 27.0 38.0 68-69 34.81138697256538 37.0 35.0 38.0 27.0 38.0 70-71 34.725546820685594 37.0 34.0 38.0 27.0 38.0 72-73 34.700438526124394 37.0 34.5 38.0 27.0 38.0 74-75 34.70837344243007 37.0 34.5 38.0 27.0 38.0 76 33.66364511471202 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 3.0 20 1.0 21 6.0 22 22.0 23 40.0 24 121.0 25 182.0 26 405.0 27 683.0 28 1070.0 29 1657.0 30 2401.0 31 3493.0 32 4575.0 33 6004.0 34 7829.0 35 9803.0 36 13779.0 37 22722.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.12685170329964 18.241617198780684 9.015187977966736 25.61634311995294 2 24.399700518744318 20.851382426867744 30.297074709877535 24.451842344510403 3 21.014492753623188 22.110808064602384 28.84913631745013 28.025562864324293 4 14.673244558532542 17.256270388790846 35.75191186694476 32.31857318573186 5 14.447296646879511 34.414941975506714 35.31739665222739 15.820364725386385 6 31.329215466067705 37.57553879886625 17.356543130648696 13.73870260441735 7 30.57115353762233 28.952082999090862 20.918230921439648 19.558532541847157 8 26.256751697951763 35.45644152093695 18.36729236857586 19.91951441253543 9 25.5588534146211 15.641210759933685 19.60666345793893 39.19327236750628 10-11 26.11570137440505 24.45451628429328 26.935263917856574 22.494518423445104 12-13 25.911144981015028 22.219771110754586 26.06155409380181 25.80752981442858 14-15 24.033370768490293 22.92101181881384 22.862853628536286 30.182763784159583 16-17 25.1898497245842 26.837665115781594 24.011979250227284 23.96050590940692 18-19 24.641023584148886 25.887748007914862 24.834884218407403 24.636344189528852 20-21 23.5908337344243 26.091635916359163 25.199876998769987 25.11765335044655 22-23 24.08150168458206 26.008743783090004 25.58091341782983 24.3288411144981 24-25 24.539413872399592 26.084951066901972 25.241991550350285 24.133643510348147 26-27 23.676399807476336 26.479357184876196 25.600299481255682 24.24394352639179 28-29 24.40504839831007 25.801513449917106 26.12706561848227 23.66637253329055 30-31 24.136317450131024 26.46732445585325 25.644419487673137 23.751938606342584 32-33 23.384940371142843 26.925905128616506 26.092972886250603 23.59618161399005 34-35 24.922455746296592 25.239986095513128 25.748034654259587 24.08952350393069 36-37 24.366944756404084 25.637734638215946 25.2038879084443 24.791432696935665 38-39 23.637627680624632 26.008075298144284 26.247392908711696 24.106904112519388 40-41 23.84418952885181 24.87766725493342 26.870420878121827 24.407722338092945 42-43 24.352906572543986 25.46994491684047 26.228675330231567 23.948473180383978 44-45 23.111530028343765 26.205278357131395 26.759452377132465 23.923739237392375 46-47 24.179100486657042 25.130354564415207 26.150462591582436 24.540082357345312 48-49 23.711161024653723 24.989304240868496 26.36103534948393 24.93849938499385 50-51 22.95376758115407 24.736616931386703 27.325659126156477 24.98395636130274 52-53 22.81138028771592 24.822183004438738 27.91258890849778 24.453847799347557 54-55 22.23648323439756 25.138376383763838 27.434622172308682 25.190518209529923 56-57 22.537969944916842 25.16778972137547 26.967351195251084 25.326889138456604 58-59 22.618856623348844 25.024733942991606 27.55160703780951 24.804802395850047 60-61 22.841462110273277 25.42315097064014 26.63511417722873 25.100272741857854 62-63 21.304615220065244 26.254077758168886 26.818947537301458 25.622359484464408 64-65 21.969089256109953 26.49540082357345 26.277474731269052 25.258035189047547 66-67 22.070030482913523 26.151799561473876 25.75806192844537 26.020108027167225 68-69 21.79996256484304 26.540857799882346 25.895101342317773 25.764078292956842 70-71 22.48248569442216 26.04417348521311 25.800176480025673 25.673164340339056 72-73 22.065351088293493 25.60297342103856 25.49334188994064 26.83833360072731 74-75 22.002513503395903 25.825578907962992 25.63840312316167 26.533504465479435 76 22.450398417027646 25.655115246804645 25.374351569602656 26.520134766565057 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.0 10 1.0 11 0.0 12 0.0 13 0.0 14 0.5 15 7.5 16 15.5 17 17.0 18 18.5 19 24.0 20 43.0 21 58.0 22 74.0 23 106.5 24 142.0 25 161.0 26 223.0 27 336.5 28 470.5 29 553.0 30 615.5 31 762.5 32 1046.0 33 1245.0 34 1353.0 35 1624.5 36 2045.5 37 2303.0 38 2579.0 39 3105.0 40 3649.0 41 4181.0 42 4419.0 43 4511.0 44 4643.0 45 4600.5 46 4518.0 47 4481.0 48 4141.5 49 3577.0 50 3315.0 51 3086.0 52 2559.0 53 2129.0 54 1997.0 55 1868.5 56 1552.0 57 1253.0 58 1142.0 59 1043.0 60 910.5 61 832.5 62 788.0 63 799.0 64 779.5 65 795.0 66 868.5 67 896.0 68 927.5 69 944.0 70 925.5 71 922.0 72 901.5 73 845.5 74 760.0 75 710.0 76 667.0 77 571.5 78 422.5 79 326.0 80 311.0 81 246.5 82 159.0 83 121.0 84 101.5 85 76.0 86 46.5 87 23.0 88 20.5 89 11.0 90 2.5 91 1.0 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 74796.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.37210546018504 #Duplication Level Percentage of deduplicated Percentage of total 1 74.4388456252863 43.451521471736456 2 13.433348602840129 15.682656826568268 3 4.491525423728813 7.865393871330017 4 2.402656894182318 5.609925664474035 5 1.2849289967934037 3.750200545483716 6 0.9344938158497481 3.272902294240334 7 0.7214841960604673 2.9480186106208888 8 0.46266605588639487 2.16054334456388 9 0.3939532753092075 2.0696293919460933 >10 1.429225836005497 12.199850259372159 >50 0.004580852038479157 0.15107759773249907 >100 0.0 0.0 >500 0.0022904260192395786 0.8382801219316541 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGAAATGCCATCTCGTATGCCGT 627 0.8382801219316541 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0013369698914380448 0.0 15 0.0 0.0 0.0 0.0013369698914380448 0.0 16 0.0 0.0 0.0 0.0013369698914380448 0.0 17 0.0 0.0 0.0 0.0013369698914380448 0.0 18 0.0 0.0 0.0 0.0013369698914380448 0.0 19 0.0 0.0 0.0 0.0013369698914380448 0.0 20 0.0 0.0 0.0 0.0013369698914380448 0.0 21 0.0 0.0 0.0 0.0026739397828760897 0.0 22 0.0 0.0 0.0 0.0026739397828760897 0.0 23 0.0 0.0 0.0 0.004010909674314134 0.0 24 0.0 0.0 0.0 0.005347879565752179 0.0 25 0.0 0.0 0.0 0.005347879565752179 0.0 26 0.0 0.0 0.0 0.005347879565752179 0.0 27 0.0 0.0 0.0 0.013369698914380447 0.0 28 0.0 0.0 0.0 0.020054548371570672 0.0 29 0.0 0.0 0.0 0.025402427937322853 0.0 30 0.0 0.0 0.0 0.03609818706882721 0.0 31 0.0 0.0 0.0 0.042783036526017434 0.0 32 0.0 0.0 0.0 0.05748970533183593 0.0 33 0.0 0.0 0.0 0.08155516337772073 0.0 34 0.0 0.0 0.0 0.1163163805551099 0.0 35 0.0 0.0 0.0 0.1724691159955078 0.0 36 0.0 0.0 0.0 0.24867639980747633 0.0 37 0.0 0.0 0.0 0.3970800577570993 0.0 38 0.0 0.0 0.0 0.5642012941868549 0.0 39 0.0 0.0 0.0 0.7781164768169421 0.0 40 0.0 0.0 0.0 0.9987165089042195 0.0 41 0.0 0.0 0.0 1.2380341194716296 0.0 42 0.0 0.0 0.0 1.5027541579763624 0.0 43 0.0 0.0 0.0 1.8062463233327986 0.0 44 0.0 0.0 0.0 2.1645542542381944 0.0 45 0.0 0.0 0.0 2.587036739932617 0.0 46 0.0 0.0 0.0 3.0576501417188084 0.0 47 0.0 0.0 0.0 3.573720519813894 0.0 48 0.0 0.0 0.0 4.088453928017541 0.0 49 0.0 0.0 0.0 4.63661158350714 0.0 50 0.0 0.0 0.0 5.076474677790256 0.0 51 0.0 0.0 0.0 5.500294133376117 0.0 52 0.0 0.0 0.0 5.934809348093481 0.0 53 0.0 0.0 0.0 6.3760094122680355 0.0 54 0.0 0.0 0.0 6.847959783945665 0.0 55 0.0 0.0 0.0 7.362693192149313 0.0 56 0.0 0.0 0.0 7.898818118615969 0.0 57 0.0 0.0 0.0 8.449649713888443 0.0 58 0.0 0.0 0.0 8.997807369378041 0.0 59 0.0 0.0 0.0 9.467083801272794 0.0 60 0.0 0.0 0.0 9.981817209476443 0.0 61 0.0 0.0 0.0 10.499224557462966 0.0 62 0.0 0.0 0.0 11.032675544146747 0.0 63 0.0 0.0 0.0 11.528691373870261 0.0 64 0.0 0.0 0.0 12.022033263810899 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTCTT 100 0.0 52.500004 47 TAAACCA 20 0.006926763 52.5 5 ATAGTGA 20 0.006926763 52.5 6 GCATACG 20 0.006926763 52.5 1 TCTCGTA 85 0.0 49.411766 38 CTGCTTG 110 0.0 47.727272 54 TCTTCTG 110 0.0 47.727272 50 CGTCTTC 110 0.0 47.727272 48 TTCTGCT 110 0.0 47.727272 52 TGCCGTC 110 0.0 47.727272 45 ATCTCGT 90 0.0 46.666668 37 TATGCCG 105 0.0 46.666664 43 TCGTATG 105 0.0 46.666664 40 ATGCCTC 30 5.844003E-4 46.666664 67 CTCGTAT 100 0.0 45.500004 39 GTATGCC 110 0.0 44.545452 42 GCCGTCT 120 0.0 43.75 46 CGTATGC 115 0.0 42.608696 41 TTGAAAA 115 0.0 42.608696 58 CTTGAAA 125 0.0 42.0 57 >>END_MODULE