##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781135_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 237400 Sequences flagged as poor quality 0 Sequence length 76 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.885126368997476 34.0 34.0 34.0 31.0 34.0 2 32.98354254422915 34.0 34.0 34.0 31.0 34.0 3 33.09277590564448 34.0 34.0 34.0 31.0 34.0 4 33.198917438921654 34.0 34.0 34.0 32.0 34.0 5 33.162228306655436 34.0 34.0 34.0 32.0 34.0 6 36.24848357203033 38.0 37.0 38.0 34.0 38.0 7 36.137712721145746 38.0 37.0 38.0 32.0 38.0 8 35.77656697556866 38.0 36.0 38.0 31.0 38.0 9 35.826107834877845 38.0 36.0 38.0 31.0 38.0 10-11 35.79565290648694 38.0 36.0 38.0 31.0 38.0 12-13 35.733430918281385 38.0 36.0 38.0 31.0 38.0 14-15 35.75532434709351 38.0 36.0 38.0 31.0 38.0 16-17 35.66993049705139 38.0 36.0 38.0 31.0 38.0 18-19 35.69411541701769 38.0 36.0 38.0 31.0 38.0 20-21 35.62417649536647 38.0 36.0 38.0 31.0 38.0 22-23 35.67057708508845 38.0 36.0 38.0 31.0 38.0 24-25 35.66403748946925 38.0 36.0 38.0 31.0 38.0 26-27 35.405524431339515 38.0 36.0 38.0 31.0 38.0 28-29 35.35040227464195 38.0 36.0 38.0 31.0 38.0 30-31 35.39999368155013 38.0 36.0 38.0 31.0 38.0 32-33 35.33437657961247 38.0 36.0 38.0 31.0 38.0 34-35 35.35037910699242 38.0 36.0 38.0 31.0 38.0 36-37 35.31474304970514 38.0 36.0 38.0 30.5 38.0 38-39 35.344264953664705 38.0 36.0 38.0 31.0 38.0 40-41 35.321286857624266 38.0 36.0 38.0 31.0 38.0 42-43 35.29739679865206 38.0 36.0 38.0 30.5 38.0 44-45 35.26101937657961 37.5 36.0 38.0 29.0 38.0 46-47 35.27627422072452 37.5 36.0 38.0 30.0 38.0 48-49 35.271278433024435 37.0 36.0 38.0 29.5 38.0 50-51 35.17308129738838 37.0 35.5 38.0 27.0 38.0 52-53 35.192173546756536 37.0 36.0 38.0 27.0 38.0 54-55 35.21687447346251 37.0 36.0 38.0 27.0 38.0 56-57 35.1222451558551 37.0 35.0 38.0 27.0 38.0 58-59 35.1353601516428 37.0 35.0 38.0 27.0 38.0 60-61 35.15653748946925 37.0 35.0 38.0 27.0 38.0 62-63 35.090149536647004 37.0 35.0 38.0 27.0 38.0 64-65 35.03763268744734 37.0 35.0 38.0 27.0 38.0 66-67 35.06513479359731 37.0 35.0 38.0 27.0 38.0 68-69 34.9812552653749 37.0 35.0 38.0 27.0 38.0 70-71 35.00256318449874 37.0 35.0 38.0 27.0 38.0 72-73 34.99121103622578 37.0 35.0 38.0 27.0 38.0 74-75 34.99453032855939 37.0 35.0 38.0 27.0 38.0 76 34.12040438079191 37.0 34.0 38.0 24.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 7.0 21 18.0 22 51.0 23 131.0 24 271.0 25 570.0 26 1024.0 27 1768.0 28 2980.0 29 4751.0 30 6970.0 31 10197.0 32 14085.0 33 18874.0 34 24698.0 35 32051.0 36 45885.0 37 73068.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.38247683235046 20.10909856781803 9.41491154170177 24.09351305812974 2 21.391322662173547 24.451979780960404 32.38921651221567 21.76748104465038 3 19.906908171861836 25.386689132266216 31.447346251053077 23.25905644481887 4 13.67228306655434 18.950294860994102 38.97051390058972 28.40690817186184 5 12.855096882898062 35.765374894692506 36.84035383319292 14.53917438921651 6 27.933445661331085 39.90732940185342 19.922072451558552 12.23715248525695 7 25.682813816343725 33.3921651221567 23.252737994945242 17.67228306655434 8 23.11541701769166 38.63100252737995 21.331929233361414 16.921651221566975 9 24.06866048862679 18.27632687447346 22.66301600673968 34.99199663016007 10-11 23.090143218197134 26.838247683235046 29.48989048020219 20.581718618365628 12-13 23.714827295703454 25.072662173546757 29.03875315922494 22.173757371524854 14-15 21.76263689974726 26.072662173546757 26.236310025273802 25.92839090143218 16-17 21.37636899747262 30.053706823925864 26.64174389216512 21.928180286436394 18-19 20.733150800336983 29.435551811288963 28.637110362257793 21.19418702611626 20-21 21.144481887110363 29.151642796967142 28.626579612468404 21.077295703454084 22-23 20.936394271272114 29.46419545071609 28.56718618365628 21.032224094355517 24-25 21.279907329401855 29.25 28.511162594776746 20.9589300758214 26-27 21.1969250210615 28.99536647009267 28.395324347093513 21.412384161752318 28-29 20.777379949452403 29.075610783487782 28.66385846672283 21.483150800336983 30-31 20.90016849199663 29.57055602358888 28.721988205560233 20.807287278854254 32-33 20.47514743049705 29.584456613310866 29.295914069081718 20.644481887110363 34-35 20.566133108677338 29.230202190395953 29.5787700084246 20.624894692502103 36-37 20.919755686604883 29.37594776748104 29.050126368997475 20.654170176916598 38-39 20.898904802021903 29.251263689974728 29.094144903117105 20.755686604886268 40-41 20.60425442291491 28.9589300758214 29.53306655433867 20.90374894692502 42-43 20.640690817186183 28.78306655433867 29.630160067396798 20.94608256107835 44-45 20.676495366470093 28.913016006739678 29.657961246840774 20.752527379949452 46-47 20.90459140690817 28.838458298230833 29.57413647851727 20.682813816343725 48-49 20.68871103622578 28.756739679865206 29.358466722830666 21.19608256107835 50-51 20.665543386689134 28.583192923336142 29.79317607413648 20.95808761583825 52-53 20.379738837405224 28.575610783487786 30.070977253580455 20.97367312552654 54-55 20.418281381634372 28.74157540016849 29.83129738837405 21.008845829823084 56-57 20.575400168491996 28.555602358887956 29.5821398483572 21.286857624262847 58-59 20.17312552653749 28.335509688289807 30.209140690817186 21.282224094355517 60-61 20.4863100252738 28.87173546756529 29.519587194608256 21.122367312552655 62-63 20.032645324347094 29.164279696714406 29.442080876158382 21.36099410278012 64-65 19.920808761583825 28.73146588037068 29.73188711036226 21.615838247683236 66-67 19.937026116259478 28.830244313395113 29.336352148272958 21.89637742207245 68-69 20.297177759056446 28.844987363100255 29.349831508003373 21.50800336983993 70-71 20.359519797809604 28.604675652906487 29.1695450716091 21.86625947767481 72-73 20.02379949452401 28.57055602358888 29.22240943555181 22.183235046335298 74-75 19.960193765796124 28.55960404380792 29.20977253580455 22.270429654591407 76 19.908593091828138 28.85804549283909 28.894271272114576 22.339090143218197 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.5 4 1.0 5 0.5 6 0.0 7 0.0 8 0.0 9 0.0 10 3.0 11 7.5 12 9.0 13 15.5 14 40.5 15 95.0 16 183.0 17 235.0 18 362.0 19 593.0 20 908.5 21 1120.0 22 1399.0 23 1978.0 24 2700.0 25 3122.0 26 3591.5 27 4623.5 28 5683.5 29 6181.0 30 6687.0 31 7773.5 32 8621.5 33 8889.0 34 9475.0 35 10461.0 36 11083.5 37 11306.0 38 11600.0 39 12022.5 40 12054.5 41 11713.0 42 11468.0 43 11147.5 44 10630.5 45 10015.5 46 9597.0 47 9400.0 48 8769.0 49 7848.0 50 7361.0 51 7063.0 52 6511.0 53 6003.5 54 5750.0 55 5569.5 56 5143.5 57 4647.5 58 4397.0 59 3908.5 60 3143.0 61 2570.0 62 2274.0 63 2033.5 64 1590.0 65 1282.0 66 1050.5 67 924.0 68 865.0 69 774.5 70 669.0 71 595.0 72 572.0 73 510.5 74 426.5 75 381.0 76 373.0 77 330.0 78 261.0 79 227.0 80 193.5 81 136.5 82 102.5 83 92.0 84 72.0 85 49.0 86 32.5 87 19.0 88 15.0 89 8.0 90 4.0 91 2.0 92 1.0 93 1.0 94 0.5 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 237400.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 82.79012853130159 #Duplication Level Percentage of deduplicated Percentage of total 1 83.34795446124727 69.00387862667733 2 13.736601504445686 22.745100082726584 3 2.345099801388952 5.824533419271635 4 0.41781739811318114 1.383646243696171 5 0.10080096625489038 0.4172662476160885 6 0.024017537359060582 0.11930490029771779 7 0.010325982911890755 0.05984226167412216 8 0.005132318575461547 0.03399242516208385 9 0.0020464105304001364 0.015248033175567274 >10 0.009184152819442607 0.1292122019798685 >50 5.09733176896678E-4 0.026164542643805692 >100 0.0 0.0 >500 5.09733176896678E-4 0.24181101507904293 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT 573 0.24136478517270432 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 4.2122999157540015E-4 0.0 6 0.0 0.0 0.0 4.2122999157540015E-4 0.0 7 0.0 0.0 0.0 4.2122999157540015E-4 0.0 8 0.0 0.0 0.0 4.2122999157540015E-4 0.0 9 0.0 0.0 0.0 8.424599831508003E-4 0.0 10 0.0 0.0 0.0 8.424599831508003E-4 0.0 11 0.0 0.0 0.0 8.424599831508003E-4 0.0 12 0.0 0.0 0.0 8.424599831508003E-4 0.0 13 0.0 0.0 0.0 0.0012636899747262005 0.0 14 0.0 0.0 0.0 0.0016849199663016006 0.0 15 0.0 0.0 0.0 0.0016849199663016006 0.0 16 0.0 0.0 0.0 0.0016849199663016006 0.0 17 0.0 0.0 0.0 0.0016849199663016006 0.0 18 0.0 0.0 0.0 0.0016849199663016006 0.0 19 0.0 0.0 0.0 0.0016849199663016006 0.0 20 0.0 0.0 0.0 0.0029486099410278013 0.0 21 0.0 0.0 0.0 0.0029486099410278013 0.0 22 0.0 0.0 0.0 0.0037910699241786015 0.0 23 0.0 0.0 0.0 0.0037910699241786015 0.0 24 0.0 0.0 0.0 0.004212299915754001 0.0 25 0.0 0.0 0.0 0.006318449873631003 0.0 26 0.0 0.0 0.0 0.006739679865206402 0.0 27 0.0 0.0 0.0 0.007582139848357203 0.0 28 0.0 0.0 0.0 0.011794439764111205 0.0 29 0.0 0.0 0.0 0.015585509688289806 0.0 30 0.0 0.0 0.0 0.019797809604043808 0.0 31 0.0 0.0 0.0 0.02443133951137321 0.0 32 0.0 0.0 0.0 0.031171019376579612 0.0 33 0.0 0.0 0.0 0.037910699241786014 0.0 34 0.0 0.0 0.0 0.04759898904802022 0.0 35 0.0 0.0 0.0 0.05602358887952822 0.0 36 0.0 0.0 0.0 0.07540016849199663 0.0 37 0.0 0.0 0.0 0.12047177759056445 0.0 38 0.0 0.0 0.0 0.19208087615838249 0.0 39 0.0 0.0 0.0 0.2860151642796967 0.0 40 0.0 0.0 0.0 0.4090143218197136 0.0 41 0.0 0.0 0.0 0.5341196293176074 0.0 42 0.0 0.0 0.0 0.6449031171019377 0.0 43 0.0 0.0 0.0 0.7586352148272957 0.0 44 0.0 0.0 0.0 0.8837405223251895 0.0 45 0.0 0.0 0.0 1.012636899747262 0.0 46 0.0 0.0 0.0 1.1672283066554339 0.0 47 0.0 0.0 0.0 1.343302443133951 0.0 48 0.0 0.0 0.0 1.5787700084246 0.0 49 0.0 0.0 0.0 1.8416175231676495 0.0 50 0.0 0.0 0.0 2.1044650379106993 0.0 51 0.0 0.0 0.0 2.355939342881213 0.0 52 0.0 0.0 0.0 2.5893007582139846 0.0 53 0.0 0.0 0.0 2.7973883740522325 0.0 54 0.0 0.0 0.0 3.0037910699241785 0.0 55 0.0 0.0 0.0 3.219882055602359 0.0 56 0.0 0.0 0.0 3.4271272114574556 0.0 57 0.0 0.0 0.0 3.650379106992418 0.0 58 0.0 0.0 0.0 3.8942712721145747 0.0 59 0.0 0.0 0.0 4.17312552653749 0.0 60 0.0 0.0 0.0 4.454085930918281 0.0 61 0.0 0.0 0.0 4.761583824768324 0.0 62 0.0 0.0 0.0 5.050126368997472 0.0 63 0.0 0.0 0.0 5.308340353833193 0.0 64 0.0 0.0 0.0 5.544229149115417 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGCCGT 100 0.0 52.499996 44 TATGCCG 95 0.0 51.57895 43 CGTATGC 105 0.0 50.000004 41 TCGTATG 105 0.0 50.000004 40 GCCGTCT 100 0.0 48.999996 46 CGTCTTC 95 0.0 47.89474 48 ATCTCGT 100 0.0 45.499996 37 CCGTCTT 100 0.0 45.499996 47 CTCGTAT 110 0.0 44.545452 39 TCTCGTA 105 0.0 43.333336 38 TGCCGTC 120 0.0 40.833336 45 AGCGTCA 35 0.0012537575 40.0 3 GCGTCAG 35 0.0012537575 40.0 4 TATCTCG 120 0.0 37.916668 36 GCGCGGC 40 0.0024155814 35.0 31 CCGCGCG 40 0.0024155814 35.0 29 GTATGCC 155 0.0 31.612904 42 CGCGCGG 45 0.0043016453 31.111109 30 CTGCTTG 180 0.0 29.166664 54 GGAGACG 50 0.0071990304 27.999998 6 >>END_MODULE