##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781134_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 120947 Sequences flagged as poor quality 0 Sequence length 76 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.755157217624248 34.0 32.0 34.0 21.0 34.0 2 30.929340950995066 34.0 32.0 34.0 21.0 34.0 3 30.965364994584405 34.0 32.0 34.0 21.0 34.0 4 31.13221493712122 34.0 32.0 34.0 23.0 34.0 5 31.15634120730568 34.0 32.0 34.0 23.0 34.0 6 33.79328962272731 37.0 34.0 38.0 23.0 38.0 7 33.710898162004845 37.0 34.0 38.0 22.0 38.0 8 33.44744392171778 37.0 34.0 38.0 21.0 38.0 9 33.80032576252408 37.0 34.0 38.0 23.0 38.0 10-11 33.67950424566132 37.0 34.0 38.0 22.0 38.0 12-13 33.625381365391455 37.0 34.0 38.0 22.0 38.0 14-15 33.49058678594757 37.0 34.0 38.0 21.5 38.0 16-17 33.45390129560882 37.0 34.0 38.0 21.5 38.0 18-19 33.46906496233888 37.0 34.0 38.0 21.0 38.0 20-21 33.41873713279371 37.0 34.0 38.0 21.5 38.0 22-23 33.47904867421267 37.0 34.0 38.0 21.5 38.0 24-25 33.462653062911855 37.0 34.0 38.0 21.0 38.0 26-27 33.375333823906345 37.0 34.0 38.0 21.0 38.0 28-29 33.46286803310541 37.0 34.0 38.0 21.0 38.0 30-31 33.53495332666375 37.0 34.0 38.0 22.0 38.0 32-33 33.488759539302336 37.0 34.0 38.0 21.5 38.0 34-35 33.50867735454372 37.0 34.0 38.0 22.0 38.0 36-37 33.322339537152644 37.0 34.0 38.0 21.0 38.0 38-39 33.36494910994072 37.0 34.0 38.0 21.0 38.0 40-41 33.37318412197078 37.0 34.0 38.0 21.0 38.0 42-43 33.421916211233025 37.0 34.0 38.0 21.0 38.0 44-45 33.44378942842732 37.0 34.0 38.0 21.5 38.0 46-47 33.469259262321515 37.0 34.0 38.0 21.5 38.0 48-49 33.407339578493065 37.0 34.0 38.0 21.0 38.0 50-51 33.27924214738687 37.0 34.0 38.0 21.0 38.0 52-53 33.365970218360104 37.0 34.0 38.0 21.0 38.0 54-55 33.314898261221856 37.0 34.0 38.0 21.0 38.0 56-57 33.268766484493206 37.0 34.0 38.0 21.0 38.0 58-59 33.267625488850484 37.0 34.0 38.0 21.0 38.0 60-61 33.2709327225975 37.0 34.0 38.0 21.0 38.0 62-63 33.20873192390055 37.0 34.0 38.0 21.0 38.0 64-65 33.20676825386326 37.0 34.0 38.0 21.0 38.0 66-67 33.12007738926968 37.0 33.0 38.0 21.0 38.0 68-69 32.85757397868488 37.0 32.0 38.0 20.0 38.0 70-71 32.98863965207901 37.0 33.0 38.0 21.0 38.0 72-73 32.94175547967292 37.0 32.0 38.0 21.0 38.0 74-75 32.916955360612505 37.0 32.0 38.0 21.0 38.0 76 31.474001008706292 36.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 12.0 14 84.0 15 246.0 16 648.0 17 1084.0 18 1464.0 19 1553.0 20 1407.0 21 1321.0 22 1307.0 23 1465.0 24 1674.0 25 1918.0 26 2218.0 27 2652.0 28 3069.0 29 3563.0 30 4217.0 31 5021.0 32 6142.0 33 7319.0 34 9079.0 35 11685.0 36 17229.0 37 34568.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 46.720464335618075 17.148006978263204 9.331360017197616 26.8001686689211 2 24.016304662372775 19.64827569100515 30.694436406029084 25.640983240592984 3 20.988532166982232 20.741316444393 28.562924256079107 29.70722713254566 4 15.13059439258518 15.806096885412618 35.074867503948006 33.98844121805419 5 15.261230125592201 32.28769626365268 34.7085913664663 17.74248224428882 6 30.72833555193597 34.622603289043965 18.537871960445486 16.111189198574582 7 29.738645853142287 27.5170115835862 21.894714213663836 20.84962834960768 8 26.279279353766526 32.62586091428477 19.983959916326985 21.11089981562172 9 24.977056065880095 15.589473074983257 20.987705358545476 38.445765500591165 10-11 26.557500392734006 22.962123905512332 26.547992095711344 23.932383606042315 12-13 26.245380207859643 21.534639139457777 25.323488800879723 26.896491851802857 14-15 24.825750121954243 22.63842840252342 22.903833910721225 29.63198756480111 16-17 25.141177540575626 25.06511116439432 24.053511042026674 25.74020025300338 18-19 24.52189802144741 24.692633963636965 25.051468825187897 25.73399918972773 20-21 24.51817738348202 24.951011600122367 25.147378603851273 25.383432412544337 22-23 25.12794860558757 24.393329309532273 25.113066053726012 25.365656031154142 24-25 24.665762689442484 24.660388434603586 24.808387144782426 25.865461731171507 26-27 24.067980189669854 24.832777993666646 25.442135811553822 25.657106005109675 28-29 24.521071213010657 24.691393750981835 25.953103425467354 24.834431610540154 30-31 24.73397438547463 24.35818995097026 25.339611565396414 25.568224098158698 32-33 24.355296121441622 25.09818350186445 25.041133719728474 25.505386656965445 34-35 25.21931093784881 23.93321041447907 25.502079423218433 25.345399224453686 36-37 25.41278411204908 23.705011285935164 24.83236458944827 26.049840012567486 38-39 24.237889323422657 24.239129536077787 26.101515539864568 25.421465600634992 40-41 24.408625265612212 23.52270002563106 26.659197830454662 25.40947687830207 42-43 24.179185924413176 23.937344456662835 26.032890439614047 25.850579179309946 44-45 23.52890108890671 24.20771081548116 26.510785716057445 25.75260237955468 46-47 23.83812744425244 23.942718711501733 26.622404855019138 25.596748989226686 48-49 23.30979685316709 24.051030616716414 27.14825502079423 25.490917509322266 50-51 23.17709409906819 24.320570167097983 26.38717785476283 26.115157879071 52-53 22.962537309730706 24.044829553440763 27.05110502947572 25.941528107352806 54-55 22.655377975476863 24.490479300850787 26.786939733933046 26.067202989739307 56-57 22.403614806485486 24.727359917980603 26.854324621528434 26.014700654005473 58-59 23.084078149933443 24.227140813744864 26.293335097191335 26.39544593913036 60-61 22.639255210960172 23.771155960875426 26.89690525602123 26.69268357214317 62-63 22.134075256103912 23.721960858888604 27.183807783574625 26.960156101432858 64-65 22.97948688268415 24.067566785451476 26.43513274409452 26.51781358776985 66-67 22.760796051162906 23.93197020182394 25.939461086260923 27.36777266075223 68-69 22.454463525345815 24.23871613185941 26.080018520508986 27.226801822285797 70-71 22.992715817672206 23.79761383085153 26.11391766641587 27.095752685060397 72-73 23.242825369790072 23.239931540261438 26.001058314799042 27.516184775149444 74-75 22.996436455637593 23.504510240022487 26.083739158474373 27.415314145865544 76 23.19528388467676 22.92078348367467 25.495464955724405 28.38846767592417 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 2.5 15 2.5 16 5.5 17 11.0 18 16.5 19 24.5 20 30.5 21 34.0 22 54.0 23 108.0 24 168.5 25 195.0 26 262.5 27 393.5 28 525.0 29 593.0 30 691.0 31 887.0 32 1316.5 33 1648.0 34 1843.0 35 2320.0 36 2928.0 37 3254.0 38 3671.0 39 4668.5 40 5610.0 41 6247.0 42 6523.0 43 6689.0 44 6968.5 45 7100.5 46 7119.0 47 7039.0 48 6566.5 49 5770.5 50 5367.0 51 5005.0 52 4165.5 53 3508.0 54 3328.0 55 3103.5 56 2643.0 57 2218.0 58 2029.0 59 1870.0 60 1677.5 61 1722.0 62 1800.0 63 1782.5 64 1801.5 65 1844.5 66 1844.0 67 1837.0 68 1862.5 69 1878.0 70 1782.5 71 1697.0 72 1728.0 73 1680.0 74 1510.0 75 1419.0 76 1319.5 77 1106.0 78 902.0 79 812.0 80 706.5 81 510.0 82 338.5 83 258.0 84 220.0 85 141.0 86 75.5 87 51.0 88 39.5 89 20.5 90 11.0 91 8.5 92 8.0 93 6.0 94 3.0 95 1.5 96 1.0 97 0.5 98 0.0 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 120947.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.341595905644624 #Duplication Level Percentage of deduplicated Percentage of total 1 73.65763289210267 40.76330954881063 2 12.428661069112858 13.756438770701216 3 5.269369826993755 8.748460069286548 4 2.5487793946275437 5.642140772404441 5 1.4626348343143993 4.047227297907348 6 1.00845609107479 3.348574168850819 7 0.7245943765500344 2.807014642777415 8 0.5542773478351809 2.453967440283761 9 0.39591239131084355 1.9719381216565932 >10 1.9466937580302985 16.369980239278362 >50 0.0029880180476290078 0.09094892804286175 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0033072337470131546 0.0 2 0.0 0.0 0.0 0.0033072337470131546 0.0 3 0.0 0.0 0.0 0.0033072337470131546 0.0 4 0.0 0.0 0.0 0.004960850620519732 0.0 5 0.0 0.0 0.0 0.00578765905727302 0.0 6 0.0 0.0 0.0 0.006614467494026309 0.0 7 0.0 0.0 0.0 0.006614467494026309 0.0 8 0.0 0.0 0.0 0.007441275930779597 0.0 9 0.0 0.0 0.0 0.007441275930779597 0.0 10 0.0 0.0 0.0 0.007441275930779597 0.0 11 0.0 0.0 0.0 0.007441275930779597 0.0 12 0.0 0.0 0.0 0.007441275930779597 0.0 13 0.0 0.0 0.0 0.008268084367532886 0.0 14 0.0 0.0 0.0 0.009094892804286174 0.0016536168735065773 15 0.0 0.0 0.0 0.009094892804286174 0.0016536168735065773 16 0.0 0.0 0.0 0.009094892804286174 0.0016536168735065773 17 0.0 0.0 0.0 0.009094892804286174 0.0016536168735065773 18 0.0 0.0 0.0 0.009094892804286174 0.0016536168735065773 19 0.0 0.0 0.0 0.01157531811454604 0.0016536168735065773 20 0.0 0.0 0.0 0.01157531811454604 0.0016536168735065773 21 0.0 0.0 0.0 0.014055743424805906 0.0016536168735065773 22 0.0 0.0 0.0 0.015709360298312484 0.0016536168735065773 23 0.0 0.0 0.0 0.01736297717181906 0.0016536168735065773 24 0.0 0.0 0.0 0.020670210918832217 0.0016536168735065773 25 0.0 0.0 0.0 0.021497019355585505 0.0016536168735065773 26 0.0 0.0 0.0 0.02397744466584537 0.0016536168735065773 27 0.0 0.0 0.0 0.038859996527404565 0.0016536168735065773 28 0.0 0.0 0.0 0.052915739952210473 0.0016536168735065773 29 0.0 0.0 0.0 0.07193233399753611 0.0016536168735065773 30 0.0 0.0 0.0 0.09260254491636832 0.0016536168735065773 31 0.0 0.0 0.0 0.1091387136514341 0.0016536168735065773 32 0.0 0.0 0.0 0.1471719017420854 0.0016536168735065773 33 0.0 0.0 0.0 0.20091445013104914 0.0016536168735065773 34 0.0 0.0 0.0 0.2902097613004043 0.0016536168735065773 35 0.0 0.0 0.0 0.4051361340091114 0.0016536168735065773 36 0.0 0.0 0.0 0.5828999479110685 0.0016536168735065773 37 0.0 0.0 0.0 0.8499590729823807 0.0016536168735065773 38 0.0 0.0 0.0 1.1153645811801864 0.0016536168735065773 39 0.0 0.0 0.0 1.429551787146436 0.0016536168735065773 40 0.0 0.0 0.0 1.773504096835804 0.0016536168735065773 41 0.0 0.0 0.0 2.157970019926083 0.0016536168735065773 42 0.0 0.0 0.0 2.4804253102598657 0.0016536168735065773 43 0.0 0.0 0.0 2.927728674543395 0.0016536168735065773 44 0.0 0.0 0.0 3.4105848016073157 0.0016536168735065773 45 0.0 0.0 0.0 3.9364349673824073 0.0016536168735065773 46 0.0 0.0 0.0 4.488743003133604 0.0016536168735065773 47 0.0 0.0 0.0 5.097274012584024 0.0016536168735065773 48 0.0 0.0 0.0 5.685134811115613 0.0016536168735065773 49 0.0 0.0 0.0 6.201063275649664 0.0016536168735065773 50 0.0 0.0 0.0 6.741795993286315 0.0016536168735065773 51 0.0 0.0 0.0 7.225478928786989 0.0016536168735065773 52 0.0 0.0 0.0 7.7190835655287025 0.0016536168735065773 53 0.0 0.0 0.0 8.186230332294311 0.0016536168735065773 54 0.0 0.0 0.0 8.674047309978752 0.0016536168735065773 55 0.0 0.0 0.0 9.23214300478722 0.0016536168735065773 56 0.0 0.0 0.0 9.827445079249589 0.0016536168735065773 57 0.0 0.0 0.0 10.35081481971442 0.0016536168735065773 58 0.0 0.0 0.0 10.958519020728087 0.0016536168735065773 59 0.0 0.0 0.0 11.514134290226297 0.0016536168735065773 60 0.0 0.0 0.0 12.002778076347491 0.0016536168735065773 61 0.0 0.0 0.0 12.50051675527297 0.0016536168735065773 62 0.0 0.0 0.0 13.011484369186503 0.0016536168735065773 63 0.0 0.0 0.0 13.518317940916269 0.0016536168735065773 64 0.0 0.0 0.0 14.030939171703308 0.0016536168735065773 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTTATC 15 0.0022200788 70.00001 7 CAGAAAC 20 0.006937075 52.5 14 ATGACAC 20 0.006937075 52.5 70 GTGGTAC 20 0.006937075 52.5 14 GCCAAAA 20 0.006937075 52.5 19 TTGTTCG 30 5.8584375E-4 46.666668 9 GTCGGTT 35 0.0012513177 40.0 60 TCACATA 40 0.0024109094 35.0 9 TTGAGCT 40 0.0024109094 35.0 4 TGTAGTT 40 0.0024109094 35.0 23 TGAGGGC 40 0.0024109094 35.0 54 GGTTCAG 45 0.004293375 31.111113 12 GATTATC 45 0.004293375 31.111113 66 AGTCATT 50 0.007185275 28.000002 38 TATGGTT 50 0.007185275 28.000002 4 CCGTGCG 50 0.007185275 28.000002 9 GGTAGTA 75 0.0018236043 23.333334 1 AAAGAAC 85 0.0037714671 20.588236 40 GATCCGT 140 8.151448E-6 20.0 70 TATATAG 90 0.005250138 19.444445 5 >>END_MODULE