##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781133_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 219768 Sequences flagged as poor quality 0 Sequence length 76 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.3338202104037 34.0 34.0 34.0 33.0 34.0 2 33.31343962724328 34.0 34.0 34.0 33.0 34.0 3 33.355265552764735 34.0 34.0 34.0 33.0 34.0 4 33.41707163918314 34.0 34.0 34.0 34.0 34.0 5 33.411247315350735 34.0 34.0 34.0 34.0 34.0 6 36.85819136543992 38.0 37.0 38.0 34.0 38.0 7 36.76544810891485 38.0 37.0 38.0 34.0 38.0 8 36.568945433366096 38.0 37.0 38.0 34.0 38.0 9 36.50972389064832 38.0 37.0 38.0 34.0 38.0 10-11 36.417005660514725 38.0 37.0 38.0 34.0 38.0 12-13 36.3569059189691 38.0 37.0 38.0 34.0 38.0 14-15 36.36236167230898 38.0 37.0 38.0 34.0 38.0 16-17 36.32489716428233 38.0 37.0 38.0 34.0 38.0 18-19 36.31643141858687 38.0 37.0 38.0 34.0 38.0 20-21 36.24703778530086 38.0 37.0 38.0 34.0 38.0 22-23 36.30503530996323 38.0 37.0 38.0 34.0 38.0 24-25 36.30832286775145 38.0 37.0 38.0 34.0 38.0 26-27 36.0942493902661 38.0 37.0 38.0 33.0 38.0 28-29 36.076007426012886 38.0 37.0 38.0 32.5 38.0 30-31 36.12219476902916 38.0 37.0 38.0 33.5 38.0 32-33 36.06488205744239 38.0 37.0 38.0 32.0 38.0 34-35 36.052371136835205 38.0 37.0 38.0 32.5 38.0 36-37 36.02846410760438 38.0 37.0 38.0 32.0 38.0 38-39 35.89499836190892 38.0 37.0 38.0 32.0 38.0 40-41 35.99287657893779 38.0 37.0 38.0 32.0 38.0 42-43 36.01355065341633 38.0 37.0 38.0 32.0 38.0 44-45 35.98138263987478 38.0 37.0 38.0 32.0 38.0 46-47 35.99810026937497 38.0 37.0 38.0 32.0 38.0 48-49 35.980820683630014 38.0 37.0 38.0 32.0 38.0 50-51 35.865501346874886 38.0 36.5 38.0 31.5 38.0 52-53 35.89905491245313 38.0 37.0 38.0 32.0 38.0 54-55 35.91209366240763 38.0 37.0 38.0 32.0 38.0 56-57 35.86951011976266 38.0 37.0 38.0 32.0 38.0 58-59 35.84856530523097 38.0 36.5 38.0 31.5 38.0 60-61 35.84904080666885 38.0 36.0 38.0 31.5 38.0 62-63 35.83636607695388 38.0 36.0 38.0 31.0 38.0 64-65 35.79288840959558 38.0 36.0 38.0 31.0 38.0 66-67 35.764961231844495 38.0 36.0 38.0 31.0 38.0 68-69 35.664955771540896 38.0 36.0 38.0 31.0 38.0 70-71 35.517978049579554 38.0 36.0 38.0 31.0 38.0 72-73 35.41459175130137 38.0 36.0 38.0 31.0 38.0 74-75 35.43184403552837 38.0 36.0 38.0 31.0 38.0 76 34.49517673182629 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 2.0 21 8.0 22 25.0 23 66.0 24 156.0 25 301.0 26 592.0 27 1090.0 28 1745.0 29 2924.0 30 4488.0 31 6501.0 32 9218.0 33 13014.0 34 17788.0 35 24865.0 36 37556.0 37 99428.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.38496960431 16.935131593316587 8.881638819118344 26.79825998325507 2 25.16699428488224 19.876870153980562 30.018929052455317 24.937206508681882 3 20.687270212223797 21.325670707291327 29.33684612864475 28.65021295184012 4 14.49073568490408 17.738706272068725 35.19757198500237 32.572986058024824 5 14.096228750318518 32.96567289141276 36.41794983801099 16.520148520257727 6 30.84889519857304 37.78939609042263 17.30233700993775 14.059371701066578 7 29.781860871464456 28.924138182082928 20.35328164245932 20.9407193039933 8 26.29045174911725 35.02557242182666 18.293382112045432 20.390593717010667 9 24.803884095955738 15.835790469950128 19.576098431072765 39.784227003021364 10-11 25.62725237523206 24.43258345163991 26.964571730188197 22.975592442939828 12-13 25.712342106221104 21.921753849514033 26.164637253831312 26.201266790433547 14-15 23.798960722216155 22.70872010483783 22.70052964944851 30.79178952349751 16-17 25.297814058461647 26.65060427359761 23.444951039277782 24.606630628662955 18-19 24.93902660987951 25.473908849332023 24.62551417858833 24.96155036220014 20-21 23.50160168905391 25.387226529795054 24.7397255287394 26.371446252411634 22-23 23.970050234793057 26.15485420989407 24.992947107859198 24.882148447453677 24-25 25.141967893414872 26.14575370390594 24.665556404936115 24.046721997743077 26-27 24.16889629063376 26.471551818281096 25.112391248953443 24.2471606421317 28-29 23.713188453278004 26.06043646026719 25.78878635652142 24.437588729933385 30-31 25.151523424702415 25.940992319172945 25.138782716319025 23.768701539805615 32-33 23.454051545265916 25.76262240180554 24.880328346256054 25.902997706672494 34-35 25.252539041170692 25.797886862509557 25.11989916639365 23.829674929926103 36-37 24.3015361654108 25.61155400240253 24.82117505733319 25.26573477485348 38-39 23.452458956717994 25.385633941247132 26.43856248407411 24.72334461796076 40-41 23.668823486585854 24.305631393105458 27.06376724545885 24.96177787484984 42-43 24.623239052091296 24.391176149393907 26.667667722325362 24.317917076189435 44-45 22.894597939645443 25.658421608241415 27.05443922682101 24.392541225292128 46-47 24.191647555604092 24.12430381129191 26.195806486840667 25.488242146263335 48-49 23.67519384077755 24.09700229332751 26.574387535946997 25.653416329947948 50-51 22.457318626915658 24.17708674602308 27.64301445160351 25.722580175457754 52-53 22.179298168978196 23.90884933202286 29.147555604091586 24.764296894907357 54-55 21.298824214626332 24.389583560845985 28.32623493866259 25.985357285865096 56-57 22.25278475483237 24.43053583779258 27.023952531760763 26.292726875614285 58-59 21.44306723453824 24.332705398420153 28.543282006479558 25.680945360562045 60-61 22.06667940737505 25.19452331549634 26.79825998325507 25.94053729387354 62-63 20.267964398820574 26.32480615922245 26.920661788795456 26.486567653161515 64-65 20.778957810054237 26.613292199046267 26.15735684904081 26.450393141858687 66-67 21.02148629463798 26.481562374868044 25.508945797386335 26.98800553310764 68-69 20.83265079538422 26.951375996505405 25.210904226274984 27.00506898183539 70-71 21.255141785883293 26.46927669178406 25.079856940045868 27.195724582286772 72-73 21.118406683411596 25.297586545811946 24.941756761675947 28.642250009100508 74-75 21.077454406464998 25.747151541625712 24.701958428888645 28.473435623020638 76 21.80026209457246 25.733500782643514 24.2196316115176 28.246605511266427 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.5 12 1.0 13 0.5 14 4.5 15 11.5 16 19.0 17 24.0 18 30.5 19 52.0 20 102.0 21 137.0 22 148.0 23 257.5 24 427.0 25 498.0 26 606.5 27 784.5 28 1055.5 29 1257.0 30 1507.0 31 1919.0 32 2646.0 33 3211.0 34 3521.0 35 4305.5 36 5469.0 37 6158.0 38 6747.5 39 8275.5 40 10187.0 41 11852.5 42 12545.0 43 13255.0 44 14130.5 45 14257.0 46 14218.0 47 13877.5 48 12573.0 49 10962.0 50 10315.0 51 9698.0 52 8090.0 53 6544.0 54 5989.0 55 5628.0 56 4758.5 57 4009.0 58 3768.0 59 3394.0 60 2917.5 61 2746.5 62 2678.0 63 2623.0 64 2545.0 65 2572.5 66 2575.0 67 2527.0 68 2521.0 69 2483.5 70 2482.0 71 2512.0 72 2491.5 73 2373.0 74 2194.5 75 2114.0 76 1967.5 77 1628.0 78 1333.5 79 1232.0 80 1079.0 81 766.5 82 526.5 83 446.0 84 362.0 85 228.0 86 126.0 87 74.0 88 58.5 89 35.5 90 17.5 91 5.0 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 219768.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.32980233700994 #Duplication Level Percentage of deduplicated Percentage of total 1 60.53908294972471 24.41529249026246 2 19.342900983843307 15.601907466055112 3 7.938442097662243 9.604674019875505 4 3.402834190811445 5.489425212041789 5 1.8232692481270871 3.6766044192057077 6 1.1496976261395433 2.7820246805722397 7 0.859734633089629 2.427104947035055 8 0.6227998916869754 2.0093917221797533 9 0.5291542557992599 1.920661788795457 >10 3.6781297951078615 27.125878198827856 >50 0.1049282426211752 2.671908558115831 >100 0.00789782471342179 0.6220195842888865 >500 0.0 0.0 >1k 0.00112826067334597 1.6531069127443485 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCGT 3633 1.6531069127443485 No Hit TCTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCCG 394 0.17927996796621892 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAGACCAGCATCTCGTATGCC 276 0.12558698263623458 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001820101197626588 0.0 2 0.0 0.0 0.0 0.002275126497033235 0.0 3 0.0 0.0 0.0 0.002275126497033235 0.0 4 0.0 0.0 0.0 0.0040952276946598235 0.0 5 0.0 0.0 0.0 0.00455025299406647 0.0 6 0.0 0.0 0.0 0.00455025299406647 0.0 7 0.0 0.0 0.0 0.005460303592879764 0.0 8 0.0 0.0 0.0 0.005460303592879764 0.0 9 0.0 0.0 0.0 0.006370354191693058 0.0 10 0.0 0.0 0.0 0.007280404790506352 0.0 11 0.0 0.0 0.0 0.007280404790506352 0.0 12 0.0 0.0 0.0 0.007280404790506352 0.0 13 0.0 0.0 0.0 0.007280404790506352 0.0 14 0.0 0.0 0.0 0.0077354300899129995 0.0 15 0.0 0.0 0.0 0.008190455389319647 0.0 16 0.0 0.0 0.0 0.008190455389319647 0.0 17 0.0 0.0 0.0 0.008190455389319647 0.0 18 0.0 0.0 0.0 0.008645480688726294 0.0 19 0.0 0.0 0.0 0.009555531287539587 0.0 20 0.0 0.0 0.0 0.010465581886352882 0.0 21 0.0 0.0 0.0 0.01228568308397947 0.0 22 0.0 0.0 0.0 0.012740708383386116 0.0 23 0.0 0.0 0.0 0.013650758982199411 0.0 24 0.0 0.0 0.0 0.014105784281606058 0.0 25 0.0 0.0 0.0 0.014560809581012704 0.0 26 0.0 0.0 0.0 0.015470860179825999 0.0 27 0.0 0.0 0.0 0.026846492664992172 0.0 28 0.0 0.0 0.0 0.037767099850751704 0.0 29 0.0 0.0 0.0 0.054603035928797644 0.0 30 0.0 0.0 0.0 0.07234902260565687 0.0 31 0.0 0.0 0.0 0.0969203887736158 0.0 32 0.0 0.0 0.0 0.12149175494157476 0.0 33 0.0 0.0 0.0 0.15743875359469986 0.0 34 0.0 0.0 0.0 0.22159732081103709 0.0 35 0.0 0.0 0.0 0.3289832914710058 0.0 36 0.0 0.0 0.0 0.485967019766299 0.0 37 0.0 0.0 0.0 0.7335007826435149 0.0 38 0.0 0.0 0.0 1.052018492228168 0.0 39 0.0 0.0 0.0 1.3891922390884934 0.0 40 0.0 0.0 0.0 1.7614029340031305 0.0 41 0.0 0.0 0.0 2.1595500709839466 0.0 42 0.0 0.0 0.0 2.564977612755269 0.0 43 0.0 0.0 0.0 3.105547668450366 0.0 44 0.0 0.0 0.0 3.691620254086127 0.0 45 0.0 0.0 0.0 4.446052200502348 0.0 46 0.0 0.0 0.0 5.271468093626005 0.0 47 0.0 0.0 0.0 6.173783262349387 0.0 48 0.0 0.0 0.0 7.01603509155109 0.0 49 0.0 0.0 0.0 7.767736886170871 0.0 50 0.0 0.0 0.0 8.518983655491246 0.0 51 0.0 0.0 0.0 9.227003021367988 0.0 52 0.0 0.0 0.0 9.92137162826253 0.0 53 0.0 0.0 0.0 10.589803793090896 0.0 54 0.0 0.0 0.0 11.356976447890503 0.0 55 0.0 0.0 0.0 12.201958428888647 0.0 56 0.0 0.0 0.0 13.047395435186196 0.0 57 0.0 0.0 0.0 13.887827163190273 0.0 58 0.0 0.0 0.0 14.705507626224017 0.0 59 0.0 0.0 0.0 15.539569000036401 0.0 60 0.0 0.0 0.0 16.336318299297442 0.0 61 0.0 0.0 0.0 17.098940701102983 0.0 62 0.0 0.0 0.0 17.795584434494558 0.0 63 0.0 0.0 0.0 18.47903243420334 0.0 64 0.0 0.0 0.0 19.215263368643296 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATATCGT 15 0.0022225042 70.0 37 CGCAATA 15 0.0022225042 70.0 28 CACCGAA 15 0.0022225042 70.0 9 CGTTGAA 20 0.006944595 52.5 16 CCGTCTT 520 0.0 52.5 47 AAAAACG 20 0.006944595 52.5 67 CTCGAAA 20 0.006944595 52.5 57 CCGTTTG 20 0.006944595 52.5 63 CGATAGA 20 0.006944595 52.5 8 TCGTATG 550 0.0 52.181816 40 TATGCCG 545 0.0 52.01835 43 CGTCTTC 535 0.0 51.682243 48 CTCGTAT 525 0.0 51.333332 39 ATGCCGT 555 0.0 51.08108 44 CGTATGC 570 0.0 50.96491 41 GCCGTCT 560 0.0 50.0 46 TCTCGTA 490 0.0 49.999996 38 CTTGAAA 550 0.0 48.999996 57 CTGCTTG 565 0.0 47.699116 54 GTATGCC 610 0.0 47.04918 42 >>END_MODULE