##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781132_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 205688 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.726201820232586 34.0 31.0 34.0 21.0 34.0 2 30.805311928746452 34.0 32.0 34.0 21.0 34.0 3 30.801412819415813 34.0 32.0 34.0 21.0 34.0 4 30.936116837151413 34.0 32.0 34.0 21.0 34.0 5 31.026778421687215 34.0 32.0 34.0 23.0 34.0 6 33.742299015985374 37.0 34.0 38.0 23.0 38.0 7 33.6522402862588 37.0 34.0 38.0 22.0 38.0 8 33.34884388005134 37.0 34.0 38.0 21.0 38.0 9 33.74475419081327 37.0 34.0 38.0 23.0 38.0 10-11 33.531098070864616 37.0 34.0 38.0 22.0 38.0 12-13 33.492622321185486 37.0 34.0 38.0 22.0 38.0 14-15 33.36801612150441 37.0 34.0 38.0 21.0 38.0 16-17 33.344815934813894 37.0 34.0 38.0 21.5 38.0 18-19 33.387954085799855 37.0 34.0 38.0 21.5 38.0 20-21 33.30672426198903 37.0 34.0 38.0 21.0 38.0 22-23 33.39024882346078 37.0 34.0 38.0 21.5 38.0 24-25 33.37423913888997 37.0 34.0 38.0 21.5 38.0 26-27 33.291395219944775 37.0 34.0 38.0 21.0 38.0 28-29 33.3951202792579 37.0 34.0 38.0 21.5 38.0 30-31 33.45841517249426 37.0 34.0 38.0 22.0 38.0 32-33 33.42705942981603 37.0 34.0 38.0 21.5 38.0 34-35 33.44930428610323 37.0 34.0 38.0 22.0 38.0 36-37 33.28779996888491 37.0 34.0 38.0 21.0 38.0 38-39 33.30655410135739 37.0 34.0 38.0 21.0 38.0 40-41 33.280466045661385 37.0 34.0 38.0 21.0 38.0 42-43 33.333252304461126 37.0 34.0 38.0 21.0 38.0 44-45 33.347224923184626 37.0 34.0 38.0 21.5 38.0 46-47 33.33479104274436 37.0 34.0 38.0 21.5 38.0 48-49 33.24775874139473 37.0 34.0 38.0 21.0 38.0 50-51 33.13927404612812 37.0 33.5 38.0 21.0 38.0 52-53 33.229575862471314 37.0 34.0 38.0 21.0 38.0 54-55 33.1867512932208 37.0 34.0 38.0 21.0 38.0 56-57 33.174098634825555 37.0 34.0 38.0 21.0 38.0 58-59 33.149393741978145 37.0 33.5 38.0 21.0 38.0 60-61 33.120152852864535 37.0 33.5 38.0 21.0 38.0 62-63 33.08177919956439 37.0 33.0 38.0 21.0 38.0 64-65 33.10851386566061 37.0 33.0 38.0 21.0 38.0 66-67 32.99614950799269 37.0 32.5 38.0 21.0 38.0 68-69 32.72094871844736 37.0 31.5 38.0 20.0 38.0 70-71 32.882513807319825 37.0 32.0 38.0 21.0 38.0 72-73 32.849186632180775 37.0 32.0 38.0 21.0 38.0 74-75 32.81745167438062 37.0 31.0 38.0 21.0 38.0 76 31.335060868888803 36.0 27.0 38.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 24.0 14 81.0 15 234.0 16 550.0 17 1115.0 18 1570.0 19 1838.0 20 2025.0 21 2357.0 22 2569.0 23 2941.0 24 3449.0 25 4079.0 26 4698.0 27 5471.0 28 6180.0 29 7258.0 30 8242.0 31 9530.0 32 11039.0 33 13179.0 34 15967.0 35 20274.0 36 29143.0 37 51871.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.2671619151336 18.4779860759986 9.584419120220918 25.670432888646882 2 23.67906732526934 19.973941114697986 30.44368169266073 25.90330986737194 3 20.224806503053166 21.172844307883786 28.92439033876551 29.677958850297536 4 14.379059546497608 16.568297615806465 35.599548831239545 33.45309400645638 5 14.542899926101668 33.12978880634748 34.8688304616701 17.458480805880754 6 30.86908327175139 35.537318657384 18.229065380576408 15.364532690288204 7 29.8417992299016 28.457664034848897 21.860293259694295 19.840243475555212 8 26.616526000544518 32.89350861498969 19.36476605344016 21.12519933102563 9 25.111333670413444 16.299929991054412 21.11401734666096 37.47471899187118 10-11 26.336490218194548 23.791373342149274 26.549677180973124 23.322459258683054 12-13 25.942446812648285 22.26065691727276 26.104342499319355 25.692553770759595 14-15 24.128048306172456 23.452510598576485 23.36572867644199 29.05371241880907 16-17 24.43846991560033 26.203035665668388 24.455729065380577 24.902765353350706 18-19 23.70386216016491 25.810207693205246 26.007107852670064 24.478822293959784 20-21 23.82030064952744 25.75915950371436 25.73436466881879 24.686175177939404 22-23 24.05171910855276 25.495653611294777 26.03506281358173 24.41756446657073 24-25 23.669100773987786 25.770341488079033 25.842295126599513 24.71826261133367 26-27 23.203832989770916 25.83305783516783 26.322634281047026 24.640474894014236 28-29 23.696326475049588 25.703978841740888 26.940803547119906 23.65889113608961 30-31 24.043697250204193 25.666543502780907 26.053051223211853 24.23670802380304 32-33 23.440356267745326 25.964810781377622 26.08343705028976 24.511395900587296 34-35 24.422426198903192 25.161652600054452 26.29176228073587 24.124158920306485 36-37 24.023521061024464 25.274201703551007 25.99787056123838 24.704406674186146 38-39 23.480222472871535 25.757944070631243 26.71108669441095 24.050746762086266 40-41 23.93892691843958 25.02357940181245 26.922328964256543 24.115164715491424 42-43 23.622428143596128 25.15873556065497 26.60947648866244 24.609359807086463 44-45 23.08326202792579 25.0031601260161 27.027828555871032 24.88574929018708 46-47 23.21914744661818 24.673291587258372 27.13551592703512 24.97204503908833 48-49 22.516384037960407 24.785840690754927 27.692670452335577 25.005104818949086 50-51 22.674876511998757 24.878213605071757 27.35453696861266 25.09237291431683 52-53 22.448076698689277 24.762990548792345 27.778966201236827 25.009966551281554 54-55 22.038718836295747 25.170160631636264 27.735210610244643 25.055909921823343 56-57 21.690618801291276 25.27882034926685 27.63141262494652 25.399148224495356 58-59 21.890489213005164 24.9538742023701 27.460103312063204 25.695533272561534 60-61 21.920875113947126 24.675782436949255 27.573381950774838 25.829960498328774 62-63 21.358805569600563 24.805773793318036 27.97027536851931 25.865145268562095 64-65 22.091225545486367 24.774658706390262 27.23007662090156 25.90403912722181 66-67 21.963848158375793 24.493893664190423 26.821448018357902 26.72081015907588 68-69 21.75941231379565 24.87456730582241 26.609719575279062 26.756300805102875 70-71 22.394840729648788 24.32737933180351 26.621630819493603 26.656149119054103 72-73 22.230028003578234 23.987058068530978 26.443691416125393 27.339222511765392 74-75 22.45196608455525 24.240111236435766 26.399935825133213 26.90798685387577 76 22.77429893819766 23.66788534090467 25.961164482128275 27.596651238769397 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1.0 1 0.5 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 1.5 10 1.5 11 0.5 12 1.0 13 2.5 14 4.5 15 12.5 16 30.5 17 41.0 18 41.5 19 59.0 20 100.0 21 124.0 22 165.0 23 263.0 24 396.5 25 473.0 26 577.5 27 838.0 28 1180.5 29 1367.0 30 1569.0 31 2030.0 32 2804.5 33 3320.0 34 3621.5 35 4420.0 36 5594.5 37 6272.0 38 6898.5 39 8316.5 40 9804.5 41 11050.5 42 11600.0 43 11700.0 44 11984.5 45 12284.5 46 12400.0 47 12186.0 48 11318.5 49 10168.0 50 9671.0 51 9142.0 52 7846.5 53 6599.5 54 6119.0 55 5696.0 56 4899.5 57 4171.0 58 3816.0 59 3523.0 60 3035.5 61 2730.5 62 2620.0 63 2550.0 64 2441.5 65 2407.0 66 2339.0 67 2267.0 68 2312.0 69 2230.0 70 2081.0 71 2059.0 72 2017.0 73 1860.0 74 1665.5 75 1586.0 76 1476.5 77 1266.0 78 1057.5 79 950.0 80 853.5 81 675.5 82 492.0 83 390.0 84 333.5 85 219.0 86 132.0 87 103.0 88 86.5 89 59.0 90 32.5 91 13.5 92 10.0 93 6.5 94 3.0 95 2.5 96 2.0 97 1.5 98 0.5 99 2.0 100 4.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 2.430866166232352E-4 60-61 2.430866166232352E-4 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 205688.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.2729468648246 #Duplication Level Percentage of deduplicated Percentage of total 1 72.5708811222546 38.66064693959372 2 13.969447592056438 14.883872786051494 3 5.27578842343403 8.431703890549736 4 2.326548882860787 4.95768460060239 5 1.284496828409746 3.4214465643954064 6 0.8177070706803405 2.6136999196407094 7 0.6465828333752653 2.411176104827578 8 0.47051028991346877 2.0052375739130754 9 0.397894052268017 1.907728983387343 >10 2.2262166168203152 20.225101203715393 >50 0.01392628792696271 0.48170143332315385 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 4.861732332464704E-4 0.0 5 0.0 0.0 0.0 9.723464664929408E-4 0.0 6 0.0 0.0 0.0 9.723464664929408E-4 0.0 7 0.0 0.0 0.0 0.001458519699739411 0.0 8 0.0 0.0 0.0 0.001458519699739411 0.0 9 4.861732332464704E-4 0.0 0.0 0.002430866166232352 0.0 10 4.861732332464704E-4 0.0 0.0 0.002430866166232352 0.0 11 4.861732332464704E-4 0.0 0.0 0.002917039399478822 0.0 12 4.861732332464704E-4 0.0 0.0 0.003403212632725293 0.0 13 4.861732332464704E-4 0.0 0.0 0.003403212632725293 0.0 14 4.861732332464704E-4 0.0 0.0 0.003889385865971763 0.0 15 4.861732332464704E-4 4.861732332464704E-4 0.0 0.003889385865971763 0.0 16 4.861732332464704E-4 4.861732332464704E-4 0.0 0.003889385865971763 0.0 17 4.861732332464704E-4 4.861732332464704E-4 0.0 0.004375559099218234 0.0 18 4.861732332464704E-4 4.861732332464704E-4 0.0 0.005834078798957644 0.0 19 4.861732332464704E-4 4.861732332464704E-4 0.0 0.005834078798957644 0.0 20 4.861732332464704E-4 4.861732332464704E-4 0.0 0.005834078798957644 0.0 21 4.861732332464704E-4 4.861732332464704E-4 0.0 0.0063202520322041145 0.0 22 4.861732332464704E-4 4.861732332464704E-4 0.0 0.007778771731943526 0.0 23 4.861732332464704E-4 4.861732332464704E-4 0.0 0.007778771731943526 0.0 24 4.861732332464704E-4 4.861732332464704E-4 0.0 0.010209637898175878 0.0 25 4.861732332464704E-4 4.861732332464704E-4 0.0 0.010209637898175878 0.0 26 4.861732332464704E-4 4.861732332464704E-4 0.0 0.010695811131422348 0.0 27 4.861732332464704E-4 4.861732332464704E-4 0.0 0.019933102563105286 0.0 28 4.861732332464704E-4 4.861732332464704E-4 0.0 0.030142740461281164 0.0 29 4.861732332464704E-4 4.861732332464704E-4 0.0 0.045214110691921744 0.0 30 4.861732332464704E-4 4.861732332464704E-4 0.0 0.057854614756329976 0.0 31 4.861732332464704E-4 4.861732332464704E-4 0.0 0.07098129205398468 0.0 32 4.861732332464704E-4 4.861732332464704E-4 0.0 0.09140056785033643 0.0 33 4.861732332464704E-4 4.861732332464704E-4 0.0 0.11959861537863171 0.0 34 4.861732332464704E-4 4.861732332464704E-4 0.0 0.16335420637081405 0.0 35 4.861732332464704E-4 4.861732332464704E-4 0.0 0.23530784489129167 0.0 36 4.861732332464704E-4 4.861732332464704E-4 0.0 0.35004472793745867 0.0 37 4.861732332464704E-4 4.861732332464704E-4 0.0 0.5474310606355256 0.0 38 4.861732332464704E-4 4.861732332464704E-4 0.0 0.7958655828244721 0.0 39 4.861732332464704E-4 4.861732332464704E-4 0.0 1.073956672241453 0.0 40 4.861732332464704E-4 4.861732332464704E-4 0.0 1.409902376414764 0.0 41 4.861732332464704E-4 4.861732332464704E-4 0.0 1.773559954883124 0.0 42 4.861732332464704E-4 4.861732332464704E-4 0.0 2.2218116759363697 0.0 43 4.861732332464704E-4 4.861732332464704E-4 0.0 2.753199019874762 0.0 44 4.861732332464704E-4 4.861732332464704E-4 0.0 3.334176033604294 0.0 45 4.861732332464704E-4 4.861732332464704E-4 0.0 3.9662012368247055 0.0 46 4.861732332464704E-4 4.861732332464704E-4 0.0 4.665318346233129 0.0 47 4.861732332464704E-4 4.861732332464704E-4 0.0 5.30171910855276 0.0 48 4.861732332464704E-4 4.861732332464704E-4 0.0 5.949788028470304 0.0 49 4.861732332464704E-4 4.861732332464704E-4 0.0 6.5156936719691965 0.0 50 4.861732332464704E-4 4.861732332464704E-4 0.0 7.055832134106025 0.0 51 4.861732332464704E-4 4.861732332464704E-4 0.0 7.648477305433472 0.0 52 4.861732332464704E-4 4.861732332464704E-4 0.0 8.244525689393646 0.0 53 4.861732332464704E-4 4.861732332464704E-4 0.0 8.848352845085762 0.0 54 4.861732332464704E-4 4.861732332464704E-4 0.0 9.488642993271363 0.0 55 4.861732332464704E-4 4.861732332464704E-4 0.0 10.187760102679787 0.0 56 4.861732332464704E-4 4.861732332464704E-4 0.0 10.871319668624324 0.0 57 4.861732332464704E-4 4.861732332464704E-4 0.0 11.50140017891175 0.0 58 4.861732332464704E-4 4.861732332464704E-4 0.0 12.13780094123138 0.0 59 4.861732332464704E-4 4.861732332464704E-4 0.0 12.684259655400412 0.0 60 4.861732332464704E-4 4.861732332464704E-4 0.0 13.271070747928903 0.0 61 4.861732332464704E-4 4.861732332464704E-4 0.0 13.838921084360779 0.0 62 4.861732332464704E-4 4.861732332464704E-4 0.0 14.398506475827467 0.0 63 4.861732332464704E-4 4.861732332464704E-4 0.0 14.969273851658823 0.0 64 4.861732332464704E-4 4.861732332464704E-4 0.0 15.599354361946249 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGGGA 35 0.0012533661 40.000004 12 TAAGGTG 35 0.0012533661 40.000004 20 CTAAGGT 50 1.7056132E-4 35.000004 3 AGTATTC 50 1.7056132E-4 35.000004 8 TAGAGCA 45 0.0043003196 31.111109 4 TAAGGTT 60 4.970242E-4 29.166668 4 GTGAGAT 60 4.970242E-4 29.166668 21 TAATGAA 60 4.970242E-4 29.166668 18 GGTAACG 50 0.0071968245 28.000002 52 TTTAACG 50 0.0071968245 28.000002 34 GGATAAA 50 0.0071968245 28.000002 1 CGCCTAT 50 0.0071968245 28.000002 1 AACGACC 50 0.0071968245 28.000002 55 GAGCAGC 50 0.0071968245 28.000002 6 CACGTAA 50 0.0071968245 28.000002 61 TCTGGTA 50 0.0071968245 28.000002 12 TGCCGCT 50 0.0071968245 28.000002 66 CTCGAAT 65 7.937013E-4 26.923077 12 CGACGAA 80 8.6367494E-5 26.25 70 GTAGCAT 70 0.0012231319 25.000002 36 >>END_MODULE