SRR1781132_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781132_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	186964
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCGT	2630	1.4066879185297705	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCG	283	0.15136603838172055	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCC	196	0.10483301598168632	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	385	0.0	60.90909	43
CGTATGC	380	0.0	60.78947	41
CTCGTAT	380	0.0	60.78947	39
CGTCTTC	380	0.0	59.86842	48
CCGTCTT	380	0.0	59.86842	47
TCTCGTA	340	0.0	59.705887	38
TCGTATG	390	0.0	59.23077	40
ATCTCGT	345	0.0	58.840576	37
TACCTCG	30	8.352788E-6	58.333336	36
GCCGTCT	400	0.0	57.750004	46
GTATGCC	410	0.0	57.19512	42
GTATCTC	360	0.0	56.388885	35
ATGCCGT	405	0.0	56.17284	44
TGCCGTC	405	0.0	56.17284	45
TAGTATC	390	0.0	53.846153	33
ATTAGAG	20	0.006942981	52.5	3
CGCATCT	20	0.006942981	52.5	15
AAAAACG	20	0.006942981	52.5	66
GTCTTCT	435	0.0	52.29885	49
TATCTCG	400	0.0	51.625004	36