##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781132_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 186964 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.28255706981023 34.0 34.0 34.0 32.0 34.0 2 33.28717828031065 34.0 34.0 34.0 33.0 34.0 3 33.335326586936525 34.0 34.0 34.0 33.0 34.0 4 33.392380351297575 34.0 34.0 34.0 33.0 34.0 5 33.38113754519587 34.0 34.0 34.0 33.0 34.0 6 36.80207419610193 38.0 37.0 38.0 34.0 38.0 7 36.71010461907105 38.0 37.0 38.0 34.0 38.0 8 36.492886331058386 38.0 37.0 38.0 34.0 38.0 9 36.47070559038104 38.0 37.0 38.0 34.0 38.0 10-11 36.36440972593654 38.0 37.0 38.0 34.0 38.0 12-13 36.31216704820179 38.0 37.0 38.0 34.0 38.0 14-15 36.31680697888363 38.0 37.0 38.0 34.0 38.0 16-17 36.24883132581674 38.0 37.0 38.0 34.0 38.0 18-19 36.25768864594254 38.0 37.0 38.0 34.0 38.0 20-21 36.16651601377805 38.0 37.0 38.0 33.0 38.0 22-23 36.25151900900708 38.0 37.0 38.0 34.0 38.0 24-25 36.229046768361826 38.0 37.0 38.0 34.0 38.0 26-27 36.02146937378319 38.0 37.0 38.0 32.5 38.0 28-29 36.000783573308226 38.0 37.0 38.0 32.0 38.0 30-31 35.99660362422712 38.0 37.0 38.0 32.0 38.0 32-33 35.949765730301024 38.0 37.0 38.0 32.0 38.0 34-35 35.985778010740034 38.0 37.0 38.0 32.0 38.0 36-37 35.94018634603453 38.0 36.5 38.0 32.0 38.0 38-39 35.85144198883207 38.0 36.0 38.0 31.0 38.0 40-41 35.90056909351533 38.0 36.5 38.0 32.0 38.0 42-43 35.92570762285788 38.0 36.5 38.0 32.0 38.0 44-45 35.879789692133244 38.0 36.0 38.0 31.5 38.0 46-47 35.91176376200766 38.0 36.5 38.0 32.0 38.0 48-49 35.88761205365739 38.0 36.5 38.0 32.0 38.0 50-51 35.78664074367258 38.0 36.0 38.0 31.0 38.0 52-53 35.81041804839434 38.0 36.0 38.0 31.0 38.0 54-55 35.811653580368414 38.0 36.0 38.0 31.0 38.0 56-57 35.777513318071925 38.0 36.0 38.0 31.0 38.0 58-59 35.759266489805526 38.0 36.0 38.0 31.0 38.0 60-61 35.75447412336065 38.0 36.0 38.0 31.0 38.0 62-63 35.73891765259622 38.0 36.0 38.0 31.0 38.0 64-65 35.68608662630239 38.0 36.0 38.0 31.0 38.0 66-67 35.648734515735654 38.0 36.0 38.0 31.0 38.0 68-69 35.556609828630116 38.0 36.0 38.0 31.0 38.0 70-71 35.45184367043923 38.0 36.0 38.0 30.5 38.0 72-73 35.34687159025267 38.0 36.0 38.0 29.5 38.0 74-75 35.343346847521445 38.0 36.0 38.0 30.0 38.0 76 34.386470122590445 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 3.0 21 9.0 22 28.0 23 52.0 24 139.0 25 275.0 26 494.0 27 977.0 28 1613.0 29 2517.0 30 4020.0 31 5933.0 32 8430.0 33 11500.0 34 15649.0 35 21408.0 36 32839.0 37 81077.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 44.495196936308595 18.495004385871077 9.973042938747566 27.036755739072767 2 23.611497400569093 20.225818874221776 30.94659934532851 25.21608437988062 3 20.430671145247214 21.860358143813784 28.721572067349864 28.98739864358914 4 14.818360753941937 17.576645771378445 34.76712094306925 32.837872531610365 5 14.687319483964828 33.26148349414861 35.209986949359234 16.841210072527332 6 30.887764489420423 36.96005648146167 17.4306283562611 14.721550672856806 7 29.59339765944246 28.58625189876126 20.75158854110952 21.068761900686763 8 26.20023106052502 34.822746625018716 18.34631265912154 20.630709655334716 9 24.505787210372052 16.179585374724546 20.11724182195503 39.19738559294837 10-11 25.719389829058 24.88714404912176 26.513392952653987 22.880073169166256 12-13 25.441796281637107 22.390674140476243 26.010087503476605 26.15744207441005 14-15 23.467619434757495 23.17291029289061 22.68832502513853 30.671145247213367 16-17 24.84488992533322 27.083021330309577 23.81126847949338 24.260820264863824 18-19 24.663571596671016 25.6257889219315 24.925654136625234 24.784985344772256 20-21 23.42857448492758 25.703878821591324 24.79701974711709 26.070526946364005 22-23 23.659100147622002 26.334214073297534 25.167144477011615 24.83954130206885 24-25 24.45256840889155 26.51900900708158 24.99839541302069 24.030027171006182 26-27 23.731573992854237 26.782963565178324 25.281070152542735 24.204392289424703 28-29 24.566226653259452 25.326800881453117 25.858454033931665 24.24851843135577 30-31 23.724353351447338 26.121606298538758 25.45971416957275 24.694326180441152 32-33 22.85413234633405 25.914347147044353 27.025256199054365 24.20626430756723 34-35 24.520228493185854 26.105025566419204 25.731691662566053 23.643054277828888 36-37 23.922252412229092 25.91621916518688 26.06170171797779 24.099826704606233 38-39 22.95762820649965 25.9309278791639 26.464453049784986 24.646990864551466 40-41 23.202060289681437 24.822960569949295 27.14560022250273 24.829378917866542 42-43 23.952204702509576 24.7914036926895 26.803288333582937 24.453103271217987 44-45 22.62521127061894 25.81192101153163 27.057615369803813 24.505252348045616 46-47 23.75778224684966 24.22578678248219 26.807032369867994 25.209398600800153 48-49 23.151783230996344 24.421813825121415 26.986746111550886 25.43965683233136 50-51 22.26792323655891 24.614096831475578 27.49700477097195 25.62097516099356 52-53 21.79644209580454 24.539216105774372 28.85715966710169 24.8071821313194 54-55 21.44022378639738 24.905864230547056 27.968485911726322 25.685426071329243 56-57 22.05371087482082 24.86173808861599 27.040232344194603 26.044318692368584 58-59 21.34929719090306 24.65340921246871 28.53677713356582 25.46051646306241 60-61 22.09382554930361 25.221967865471427 26.955189234291094 25.72901735093387 62-63 20.564921589182944 26.33448150446075 26.75140668791853 26.349190218437773 64-65 21.08026144070516 26.711292013435738 26.016238420230632 26.192208125628465 66-67 21.064750433238487 26.487986992148222 25.669112770372905 26.778149804240385 68-69 20.989067414047625 26.83136860572089 25.241222909223165 26.93834107100832 70-71 21.43300314499048 26.325121413748104 25.306208681885284 26.935666759376137 72-73 21.27200958473289 25.57952333069468 25.21956098500246 27.92890609956997 74-75 21.504674696733062 25.58834855908089 25.37734537130143 27.529631372884623 76 21.890310434094264 25.572837551614214 25.22892107571511 27.30793093857641 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 0.5 10 0.0 11 0.0 12 0.0 13 0.0 14 4.0 15 9.0 16 20.0 17 30.0 18 42.0 19 75.0 20 107.5 21 119.0 22 150.0 23 245.0 24 416.5 25 524.0 26 618.0 27 805.0 28 1091.5 29 1285.0 30 1443.0 31 1819.0 32 2487.0 33 2937.0 34 3299.5 35 3941.5 36 4867.5 37 5514.0 38 6013.5 39 7446.5 40 9290.5 41 10680.5 42 11160.0 43 11329.5 44 11233.0 45 11081.5 46 11196.0 47 10991.0 48 10188.5 49 9234.0 50 8877.0 51 8261.5 52 6849.0 53 5763.0 54 5474.0 55 5054.5 56 4278.5 57 3607.0 58 3292.0 59 2969.5 60 2519.0 61 2365.5 62 2340.0 63 2291.5 64 2195.5 65 2151.5 66 2164.0 67 2173.0 68 2121.5 69 2007.5 70 1951.5 71 1958.0 72 1892.0 73 1769.0 74 1597.0 75 1482.0 76 1413.0 77 1235.0 78 1001.0 79 876.0 80 791.5 81 601.5 82 439.0 83 382.0 84 308.5 85 191.0 86 112.0 87 77.0 88 58.5 89 34.5 90 22.5 91 9.5 92 3.0 93 3.5 94 3.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 186964.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.27983996919193 #Duplication Level Percentage of deduplicated Percentage of total 1 62.83473309944836 28.45146659249909 2 18.912789255466176 17.12736141717122 3 7.466600517381907 10.14259429622815 4 3.197609175850786 5.791489270661732 5 1.7151564548708316 3.883100489933891 6 1.005232880919475 2.7310070387882157 7 0.807966263864772 2.5609208189811943 8 0.6260557307724111 2.2678162640936224 9 0.5457315992770828 2.223957553325774 >10 2.8467817191726614 22.047025095740356 >50 0.03661835406404668 1.0338888770030594 >100 0.003543711683617421 0.3326843670439229 >500 0.0 0.0 >1k 0.0011812372278724736 1.4066879185297705 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCGT 2630 1.4066879185297705 No Hit TCTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCCG 283 0.15136603838172055 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGACTTAGTATCTCGTATGCC 196 0.10483301598168632 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.34862326437175E-4 0.0 5 0.0 0.0 0.0 0.00106972465287435 0.0 6 0.0 0.0 0.0 0.00106972465287435 0.0 7 0.0 0.0 0.0 0.0016045869793115252 0.0 8 0.0 0.0 0.0 0.0016045869793115252 0.0 9 0.0 0.0 0.0 0.0026743116321858752 0.0 10 0.0 0.0 0.0 0.0026743116321858752 0.0 11 0.0 0.0 0.0 0.0032091739586230504 0.0 12 0.0 0.0 0.0 0.0042788986114974 0.0 13 0.0 0.0 0.0 0.0042788986114974 0.0 14 0.0 0.0 0.0 0.004813760937934576 0.0 15 0.0 0.0 0.0 0.004813760937934576 0.0 16 0.0 0.0 0.0 0.004813760937934576 0.0 17 0.0 0.0016045869793115252 0.0 0.0053486232643717505 0.0 18 0.0 0.0016045869793115252 0.0 0.006953210243683276 0.0 19 0.0 0.0016045869793115252 0.0 0.007488072570120451 0.0 20 0.0 0.0016045869793115252 0.0 0.007488072570120451 0.0 21 0.0 0.0016045869793115252 0.0 0.008022934896557626 0.0 22 0.0 0.0016045869793115252 0.0 0.011232108855180677 0.0 23 0.0 0.0016045869793115252 0.0 0.011766971181617852 0.0 24 0.0 0.0016045869793115252 0.0 0.012301833508055027 0.0 25 0.0 0.0016045869793115252 0.0 0.012301833508055027 0.0 26 0.0 0.0016045869793115252 0.0 0.012836695834492201 0.0 27 0.0 0.0016045869793115252 0.0 0.021929355383924178 0.0 28 0.0 0.0016045869793115252 0.0 0.033161464239104856 0.0 29 0.0 0.0016045869793115252 0.0 0.04974219635865728 0.0 30 0.0 0.0016045869793115252 0.0 0.06364861684602384 0.0 31 0.0 0.0016045869793115252 0.0 0.07969448663913908 0.0 32 0.0 0.0016045869793115252 0.0 0.10269356667593761 0.0 33 0.0 0.0016045869793115252 0.0 0.13425044393573093 0.0 34 0.0 0.0016045869793115252 0.0 0.18720181425301127 0.0 35 0.0 0.0016045869793115252 0.0 0.2727797864829593 0.0 36 0.0 0.0016045869793115252 0.0 0.4113091290301876 0.0 37 0.0 0.0016045869793115252 0.0 0.6332769945016152 0.0 38 0.0 0.0016045869793115252 0.0 0.9135448535546951 0.0 39 0.0 0.0016045869793115252 0.0 1.2366016987227488 0.0 40 0.0 0.0016045869793115252 0.0 1.6051218416379625 0.0 41 0.0 0.0016045869793115252 0.0 2.0084080357715925 0.0 42 0.0 0.0016045869793115252 0.0 2.49352816585011 0.0 43 0.0 0.0016045869793115252 0.0 3.0717143407286964 0.0 44 0.0 0.0016045869793115252 0.0 3.7172931687383666 0.0 45 0.0 0.0016045869793115252 0.0 4.407265569842322 0.0 46 0.0 0.0016045869793115252 0.0 5.167304935709549 0.0 47 0.0 0.0016045869793115252 0.0 5.870114032647996 0.0 48 0.0 0.0016045869793115252 0.0 6.567574506322073 0.0 49 0.0 0.0016045869793115252 0.0 7.172503797522518 0.0 50 0.0 0.0016045869793115252 0.0 7.744271624483858 0.0 51 0.0 0.0016045869793115252 0.0 8.381827517596971 0.0 52 0.0 0.0016045869793115252 0.0 9.032754968871012 0.0 53 0.0 0.0016045869793115252 0.0 9.67886865920712 0.0 54 0.0 0.0016045869793115252 0.0 10.377933719860508 0.0 55 0.0 0.0016045869793115252 0.0 11.141182259686357 0.0 56 0.0 0.0016045869793115252 0.0 11.881966581801844 0.0 57 0.0 0.0016045869793115252 0.0 12.591194026657538 0.0 58 0.0 0.0016045869793115252 0.0 13.272073768212062 0.0 59 0.0 0.0016045869793115252 0.0 13.887165443614814 0.0 60 0.0 0.0016045869793115252 0.0 14.510814916240559 0.0 61 0.0 0.0016045869793115252 0.0 15.121627693031813 0.0 62 0.0 0.0016045869793115252 0.0 15.725487259579385 0.0 63 0.0 0.0016045869793115252 0.0 16.329346826126955 0.0 64 0.0 0.0016045869793115252 0.0 17.016644915598725 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATGCCG 385 0.0 60.90909 43 CGTATGC 380 0.0 60.78947 41 CTCGTAT 380 0.0 60.78947 39 CGTCTTC 380 0.0 59.86842 48 CCGTCTT 380 0.0 59.86842 47 TCTCGTA 340 0.0 59.705887 38 TCGTATG 390 0.0 59.23077 40 ATCTCGT 345 0.0 58.840576 37 TACCTCG 30 8.352788E-6 58.333336 36 GCCGTCT 400 0.0 57.750004 46 GTATGCC 410 0.0 57.19512 42 GTATCTC 360 0.0 56.388885 35 ATGCCGT 405 0.0 56.17284 44 TGCCGTC 405 0.0 56.17284 45 TAGTATC 390 0.0 53.846153 33 ATTAGAG 20 0.006942981 52.5 3 CGCATCT 20 0.006942981 52.5 15 AAAAACG 20 0.006942981 52.5 66 GTCTTCT 435 0.0 52.29885 49 TATCTCG 400 0.0 51.625004 36 >>END_MODULE