##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781131_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 293372 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.726623535988438 34.0 33.0 34.0 24.0 34.0 2 31.893888987360757 34.0 34.0 34.0 24.0 34.0 3 31.82452313104182 34.0 34.0 34.0 23.0 34.0 4 31.98578255593581 34.0 34.0 34.0 27.0 34.0 5 32.0083750323821 34.0 34.0 34.0 27.0 34.0 6 34.969724445414016 38.0 36.0 38.0 27.0 38.0 7 34.948423844129636 38.0 35.0 38.0 27.0 38.0 8 34.71933586027296 38.0 35.0 38.0 27.0 38.0 9 34.93487108517514 38.0 36.0 38.0 27.0 38.0 10-11 34.827727254134686 38.0 35.0 38.0 27.0 38.0 12-13 34.79642569843067 38.0 35.0 38.0 27.0 38.0 14-15 34.67195062923524 38.0 35.0 38.0 26.0 38.0 16-17 34.658201873389416 38.0 35.0 38.0 26.5 38.0 18-19 34.70708520240514 38.0 35.0 38.0 26.5 38.0 20-21 34.63831926700571 38.0 34.5 38.0 26.5 38.0 22-23 34.703766889819065 38.0 35.0 38.0 26.5 38.0 24-25 34.67625915220266 38.0 35.0 38.0 26.5 38.0 26-27 34.61853210258647 38.0 35.0 38.0 26.0 38.0 28-29 34.72077260270237 38.0 35.0 38.0 26.5 38.0 30-31 34.77557844647751 38.0 35.0 38.0 27.0 38.0 32-33 34.71273843447909 38.0 35.0 38.0 26.5 38.0 34-35 34.738340741447715 38.0 35.0 38.0 26.5 38.0 36-37 34.60320514568534 38.0 35.0 38.0 26.0 38.0 38-39 34.61571486031387 38.0 35.0 38.0 26.0 38.0 40-41 34.59474148862195 38.0 34.5 38.0 26.0 38.0 42-43 34.67507464925078 38.0 35.0 38.0 26.5 38.0 44-45 34.68241515891087 38.0 35.0 38.0 26.5 38.0 46-47 34.68540965054606 38.0 35.0 38.0 26.5 38.0 48-49 34.659585781874206 38.0 35.0 38.0 26.5 38.0 50-51 34.53019545150866 37.5 34.5 38.0 25.5 38.0 52-53 34.611419971912795 38.0 35.0 38.0 26.0 38.0 54-55 34.5936643578801 38.0 35.0 38.0 26.0 38.0 56-57 34.563003626794654 37.5 34.5 38.0 25.5 38.0 58-59 34.55315606124647 37.5 34.5 38.0 25.5 38.0 60-61 34.53489937690031 37.0 34.5 38.0 25.5 38.0 62-63 34.49876095878271 37.0 34.0 38.0 25.0 38.0 64-65 34.52524780824346 37.0 34.0 38.0 25.0 38.0 66-67 34.424418485745065 37.0 34.0 38.0 25.0 38.0 68-69 34.20309368310541 37.0 34.0 38.0 24.5 38.0 70-71 34.36992282835445 37.0 34.0 38.0 25.0 38.0 72-73 34.33525694340291 37.0 34.0 38.0 24.5 38.0 74-75 34.32824195901449 37.0 34.0 38.0 24.5 38.0 76 32.9430518249867 37.0 32.0 38.0 22.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 5.0 13 18.0 14 91.0 15 288.0 16 585.0 17 1051.0 18 1415.0 19 1427.0 20 1511.0 21 1569.0 22 1681.0 23 2076.0 24 2579.0 25 3085.0 26 3769.0 27 4697.0 28 5836.0 29 7204.0 30 8929.0 31 10847.0 32 13708.0 33 17349.0 34 22171.0 35 30322.0 36 46867.0 37 104292.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.184557490149025 17.91343413822723 9.356721159483522 24.545287212140217 2 24.216694163042142 20.547973221711683 30.964441050952374 24.270891564293798 3 19.46198001172573 22.501465715882908 30.05501547523281 27.981538797158557 4 13.512877847920047 16.700980325320753 38.863967931499936 30.922173895259263 5 12.785132868849105 34.84620209154248 36.99569147703257 15.372973562575842 6 28.730417354076053 38.90214471728727 18.78843243390644 13.57900549473024 7 28.988451522299336 29.96707252225843 22.796994941575882 18.247481013866356 8 25.667071158801797 34.95630121483986 19.52742593021829 19.849201696140053 9 24.949211240336503 16.132759772575433 21.468647314672157 37.44938167241591 10-11 24.9933531489031 24.65692022415227 28.39807479923101 21.95165182771362 12-13 25.245933490585333 23.317324080007634 26.85907312217935 24.577669307227684 14-15 23.522013007376298 24.27276631716728 24.166416699616867 28.03880397583955 16-17 23.641145030882292 27.162783087683895 25.525612532893394 23.670459348540422 18-19 22.899765485458733 27.09835976166778 26.861800035449875 23.140074717423612 20-21 23.08655904448959 27.00666730294643 26.630694135773012 23.27607951679097 22-23 23.312551981784218 26.438787614359928 27.203175490503522 23.045484913352333 24-25 22.881017956723888 26.938324039103932 27.15732926114285 23.023328743029328 26-27 22.301548886737656 27.21016320575924 27.145569447663714 23.342718459839386 28-29 23.048723122861077 26.75442782542301 27.993639474796506 22.203209576919406 30-31 23.090478982315968 26.593369510382725 27.45149503020056 22.864656477100745 32-33 22.664228351717274 27.271177890187204 26.89827250044312 23.1663212576524 34-35 23.71085175136005 26.085141049588916 27.36525639802026 22.838750801030773 36-37 23.835608033486494 26.12161351458217 26.593880806620945 23.44889764531039 38-39 23.011057633311975 26.941562248612684 27.333385599171017 22.713994518904325 40-41 23.1530275554586 25.940955510409992 28.0399970003954 22.866019933736005 42-43 22.941862209072443 26.238189056897042 27.48745619895559 23.332492535074923 44-45 22.31859209467843 26.479691313417774 27.703904939803394 23.497811652100406 46-47 22.60406582768635 25.670479800389952 27.949838430388724 23.77561594153498 48-49 21.9843747869599 25.744788187011714 28.580437124197267 23.69039990183112 50-51 22.107597180371677 25.58032123038327 28.275363702057454 24.0367178871876 52-53 21.924041830849568 25.577083020874518 28.683548532238934 23.815326616036977 54-55 20.999618232142126 26.389021447172873 28.843584254802778 23.767776065882224 56-57 21.008651132350735 25.99344859086757 28.65917674488363 24.33872353189807 58-59 21.412916024705833 26.002651923155582 28.162708097568956 24.421723954569625 60-61 20.96740656913407 25.633325607079065 28.627817242272606 24.771450581514255 62-63 20.318912506987715 25.494764326520595 29.314488090206293 24.871835076285397 64-65 21.29088665584991 25.74069781710593 28.294111230792307 24.674304296251858 66-67 21.31508801112581 25.534986297260815 27.919331088174744 25.23059460343864 68-69 20.90247194687973 25.51385271941426 27.72384549309409 25.85982984061192 70-71 21.656633898258864 25.253773366238086 27.780599375536863 25.308993359966188 72-73 21.57721254925487 24.519211103990838 27.384174358834517 26.51940198791977 74-75 21.65680433033827 24.884617482240976 27.28941412268383 26.169164064736922 76 22.06345527180508 24.54290116302851 27.157670125301664 26.235973439864747 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.5 10 0.5 11 0.0 12 0.0 13 1.5 14 3.0 15 8.5 16 24.5 17 35.0 18 39.5 19 59.5 20 94.0 21 113.0 22 148.5 23 318.0 24 529.0 25 606.0 26 851.0 27 1139.0 28 1527.0 29 1872.0 30 2152.5 31 2677.5 32 3779.0 33 4636.0 34 5284.0 35 6648.0 36 8448.5 37 9533.0 38 10588.0 39 13032.0 40 15934.5 41 18311.0 42 19174.0 43 19483.5 44 19898.5 45 20332.5 46 20661.0 47 20214.0 48 18718.5 49 16780.5 50 15891.0 51 14799.0 52 12072.5 53 9685.0 54 8932.0 55 8182.0 56 6582.5 57 5096.0 58 4459.0 59 3884.5 60 2922.5 61 2400.0 62 2265.0 63 2074.0 64 1883.0 65 1791.0 66 1656.0 67 1613.0 68 1604.5 69 1587.0 70 1498.5 71 1419.0 72 1378.0 73 1328.0 74 1259.0 75 1199.0 76 1069.0 77 894.5 78 748.5 79 647.0 80 576.0 81 444.5 82 320.5 83 257.0 84 212.5 85 137.0 86 96.0 87 86.0 88 66.5 89 32.5 90 21.0 91 17.5 92 11.0 93 9.0 94 6.5 95 3.0 96 0.0 97 0.5 98 0.5 99 3.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 293372.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.706598768875075 #Duplication Level Percentage of deduplicated Percentage of total 1 66.55139755775143 23.763240501025226 2 14.235776910418831 10.166223486070827 3 6.082742502979131 6.515821379047762 4 2.808441683168914 4.011196013867863 5 1.7240902016504696 3.078069853584111 6 1.1771656366311747 2.521954864301805 7 0.9012840100992925 2.252725056779273 8 0.7030992579403202 2.0084226478375053 9 0.5955427395833068 1.9138325086816017 >10 4.869905943671296 34.692922989567684 >50 0.31669326943652104 7.540826595408088 >100 0.033860286669313566 1.5347641038282238 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.002386049111708002 0.0 2 0.0 0.0 0.0 0.002386049111708002 0.0 3 0.0 0.0 0.0 0.002726913270523431 0.0 4 0.0 0.0 0.0 0.0034086415881542887 0.0 5 0.0 0.0 0.0 0.0037495057469697176 0.0 6 0.0 0.0 0.0 0.0037495057469697176 0.0 7 0.0 0.0 0.0 0.0037495057469697176 0.0 8 0.0 0.0 0.0 0.0037495057469697176 0.0 9 0.0 0.0 0.0 0.0040903699057851465 0.0 10 0.0 0.0 0.0 0.0040903699057851465 0.0 11 0.0 0.0 0.0 0.0040903699057851465 0.0 12 0.0 0.0 0.0 0.0040903699057851465 0.0 13 0.0 0.0 0.0 0.0040903699057851465 0.0 14 0.0 0.0 0.0 0.0040903699057851465 0.0 15 0.0 0.0 0.0 0.0040903699057851465 0.0 16 0.0 0.0 0.0 0.004431234064600576 0.0 17 0.0 0.0 0.0 0.004431234064600576 0.0 18 0.0 0.0 0.0 0.004431234064600576 0.0 19 0.0 0.0 0.0 0.004772098223416004 0.0 20 0.0 0.0 0.0 0.004772098223416004 0.0 21 0.0 0.0 0.0 0.0051129623822314335 0.0 22 0.0 0.0 0.0 0.00613555485867772 0.0 23 0.0 0.0 0.0 0.0068172831763085775 0.0 24 0.0 0.0 0.0 0.007839875652754864 0.0 25 0.0 0.0 0.0 0.007839875652754864 0.0 26 0.0 0.0 0.0 0.00920333228801658 0.0 27 0.0 0.0 0.0 0.012952838034986298 0.0 28 0.0 0.0 0.0 0.02113357784655659 0.0 29 0.0 0.0 0.0 0.03681332915206632 0.0 30 0.0 0.0 0.0 0.044312340646005755 0.0 31 0.0 0.0 0.0 0.0613555485867772 0.0 32 0.0 0.0 0.0 0.07873962068636407 0.0 33 0.0 0.0 0.0 0.09748714942121266 0.0 34 0.0 0.0 0.0 0.141458625908403 0.0 35 0.0 0.0 0.0 0.20963145767148875 0.0 36 3.408641588154289E-4 0.0 0.0 0.31598107522190255 0.0 37 3.408641588154289E-4 0.0 0.0 0.49186698117066385 0.0 38 3.408641588154289E-4 0.0 0.0 0.7195642392593704 0.0 39 3.408641588154289E-4 0.0 0.0 0.9912329738352672 0.0 40 3.408641588154289E-4 0.0 0.0 1.2768771389225966 0.0 41 3.408641588154289E-4 0.0 0.0 1.5805871044271438 0.0 42 3.408641588154289E-4 0.0 0.0 1.9422439769303137 0.0 43 3.408641588154289E-4 0.0 0.0 2.3754823227847237 0.0 44 3.408641588154289E-4 0.0 0.0 2.941998554735967 0.0 45 3.408641588154289E-4 0.0 0.0 3.6373614387194415 0.0 46 3.408641588154289E-4 0.0 0.0 4.414531720818619 0.0 47 3.408641588154289E-4 0.0 0.0 5.214880765717246 0.0 48 3.408641588154289E-4 0.0 0.0 5.941603152311741 0.0 49 3.408641588154289E-4 0.0 0.0 6.6315122097541686 0.0 50 3.408641588154289E-4 0.0 0.0 7.281540160615192 0.0 51 3.408641588154289E-4 0.0 0.0 7.914524903535443 0.0 52 3.408641588154289E-4 0.0 0.0 8.521603970385723 0.0 53 3.408641588154289E-4 0.0 0.0 9.110958100977598 0.0 54 3.408641588154289E-4 0.0 0.0 9.793368146926086 0.0 55 3.408641588154289E-4 0.0 0.0 10.525885224220444 0.0 56 3.408641588154289E-4 0.0 0.0 11.284307977584772 0.0 57 3.408641588154289E-4 0.0 0.0 12.082611837530507 0.0 58 3.408641588154289E-4 0.0 0.0 12.84819273822996 0.0 59 3.408641588154289E-4 0.0 0.0 13.530261920019633 0.0 60 3.408641588154289E-4 0.0 0.0 14.256302578296497 0.0 61 3.408641588154289E-4 0.0 0.0 14.915533861445537 0.0 62 3.408641588154289E-4 0.0 0.0 15.551927245953943 0.0 63 3.408641588154289E-4 0.0 0.0 16.178776434015518 0.0 64 3.408641588154289E-4 0.0 0.0 16.829145249035353 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAAAGA 20 0.006946902 52.500004 33 CAATACG 40 4.5864E-5 43.750004 69 AGACTCG 40 0.0024165066 35.000004 31 GAAGTAC 40 0.0024165066 35.000004 37 CATCGTT 80 6.224036E-8 35.000004 32 GAACCGT 40 0.0024165066 35.000004 69 GCCGTTA 40 0.0024165066 35.000004 67 CGAAGTA 40 0.0024165066 35.000004 36 AGACCGC 65 2.0987156E-5 32.307693 17 TTAAGGT 55 2.988062E-4 31.81818 43 CACGGTT 45 0.004303282 31.111113 49 ACTCTGA 45 0.004303282 31.111113 42 ACGGCGT 45 0.004303282 31.111113 41 TTCGGTC 90 1.7511411E-7 31.111113 28 TCGAAGT 45 0.004303282 31.111113 35 GTCGGAA 45 0.004303282 31.111113 13 ACGGTTA 45 0.004303282 31.111113 50 TCGTTGT 80 2.4603414E-6 30.625002 34 CGCAACC 70 3.4820787E-5 30.000002 21 CGAATAT 60 4.975356E-4 29.166666 25 >>END_MODULE