##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781131_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 265970 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.29798849494304 34.0 34.0 34.0 33.0 34.0 2 33.28728428018198 34.0 34.0 34.0 33.0 34.0 3 33.33114636989134 34.0 34.0 34.0 33.0 34.0 4 33.392942813099225 34.0 34.0 34.0 33.0 34.0 5 33.384791517840355 34.0 34.0 34.0 33.0 34.0 6 36.82220927172237 38.0 37.0 38.0 34.0 38.0 7 36.71637402714592 38.0 37.0 38.0 34.0 38.0 8 36.511474978381024 38.0 37.0 38.0 34.0 38.0 9 36.47322630371846 38.0 37.0 38.0 34.0 38.0 10-11 36.36962251381735 38.0 37.0 38.0 34.0 38.0 12-13 36.312819114937774 38.0 37.0 38.0 34.0 38.0 14-15 36.32576418393052 38.0 37.0 38.0 34.0 38.0 16-17 36.26663909463473 38.0 37.0 38.0 34.0 38.0 18-19 36.262407414370045 38.0 37.0 38.0 34.0 38.0 20-21 36.21367259465353 38.0 37.0 38.0 33.5 38.0 22-23 36.263725232169044 38.0 37.0 38.0 34.0 38.0 24-25 36.26108771665977 38.0 37.0 38.0 34.0 38.0 26-27 36.02848441553559 38.0 37.0 38.0 32.5 38.0 28-29 35.99460653457157 38.0 37.0 38.0 32.0 38.0 30-31 36.035255855923594 38.0 37.0 38.0 32.0 38.0 32-33 35.990728277625294 38.0 37.0 38.0 32.0 38.0 34-35 36.00982629619882 38.0 37.0 38.0 32.0 38.0 36-37 35.966257472647285 38.0 37.0 38.0 32.0 38.0 38-39 35.901731398278 38.0 37.0 38.0 32.0 38.0 40-41 35.93952889423619 38.0 37.0 38.0 32.0 38.0 42-43 35.93262210023687 38.0 37.0 38.0 32.0 38.0 44-45 35.925292326202204 38.0 37.0 38.0 32.0 38.0 46-47 35.94736624431327 38.0 37.0 38.0 32.0 38.0 48-49 35.92909726660902 38.0 37.0 38.0 32.0 38.0 50-51 35.83008797984735 38.0 36.0 38.0 31.0 38.0 52-53 35.86823513930142 38.0 36.0 38.0 32.0 38.0 54-55 35.87453848178366 38.0 37.0 38.0 32.0 38.0 56-57 35.83390419972177 38.0 36.0 38.0 31.0 38.0 58-59 35.83919239011919 38.0 36.0 38.0 31.5 38.0 60-61 35.826290559085606 38.0 36.0 38.0 31.0 38.0 62-63 35.81393766214235 38.0 36.0 38.0 31.0 38.0 64-65 35.76164981012896 38.0 36.0 38.0 31.0 38.0 66-67 35.74107982103244 38.0 36.0 38.0 31.0 38.0 68-69 35.657476407113585 38.0 36.0 38.0 31.0 38.0 70-71 35.555523179305936 38.0 36.0 38.0 31.0 38.0 72-73 35.46985938263714 38.0 36.0 38.0 31.0 38.0 74-75 35.46856976350716 38.0 36.0 38.0 31.0 38.0 76 34.54771590780915 37.0 34.0 38.0 26.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 3.0 20 4.0 21 11.0 22 23.0 23 71.0 24 163.0 25 334.0 26 727.0 27 1297.0 28 2174.0 29 3458.0 30 5345.0 31 8205.0 32 11507.0 33 16077.0 34 22190.0 35 30839.0 36 46594.0 37 116947.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.186787983607175 17.98774297853141 9.308192653306763 26.51727638455465 2 24.00308305447983 20.435387449712373 30.836184532090083 24.725344963717713 3 19.71312554047449 22.380719630033465 29.8481031695304 28.058051659961652 4 13.403391359927811 17.941121179080348 37.85727713651916 30.798210324472684 5 12.610068804752416 34.79978944993796 37.442192728503215 15.147949016806406 6 28.802120539910515 39.943226679700714 17.930593675978493 13.32405910441027 7 28.17535812309659 30.111666729330377 22.11452419445802 19.598450953115012 8 25.088167838478025 35.861939316464266 18.940482009249163 20.10941083580855 9 24.34259502951461 16.06572169793586 20.538030604955445 39.05365266759409 10-11 24.373237583186075 25.39290145505132 28.14339963153739 22.090461330225214 12-13 24.485844268150544 23.485355491220812 27.046847388803247 24.981952851825394 14-15 22.744858442681508 24.043689137872693 23.728240027070722 29.48321239237508 16-17 23.780313569199535 27.62228822799564 24.91615595743881 23.68124224536602 18-19 23.329510847088017 26.88423506410497 26.08922058878821 23.6970335000188 20-21 22.287100048877694 26.875775463398128 25.98939730044742 24.84772718727676 22-23 22.608188893484225 27.286536075497235 26.47629431890815 23.62898071211039 24-25 23.044140316577057 27.563822987554985 26.25352483362785 23.1385118622401 26-27 22.30853103733504 27.752002105500623 26.62461931796819 23.31484753919615 28-29 22.738090762116027 26.449787570026693 27.857277136519155 22.95484453133812 30-31 22.621912245742003 26.39602210775651 27.66345828476896 23.31860736173253 32-33 22.104184682482988 27.76948528029477 27.283152235214498 22.843177802007745 34-35 23.10974921983682 26.175508515998047 28.1255404744896 22.589201789675528 36-37 23.052223935030266 27.320750460578257 26.327217355340828 23.299808249050642 38-39 22.071098244162876 27.24480204534346 27.35101703199609 23.333082678497576 40-41 22.31623867353461 25.806857916306353 28.10279354814453 23.774109862014512 42-43 23.16520660224837 25.96683836522916 27.569838703613193 23.298116328909277 44-45 21.733090198142648 26.979170583148477 27.684513290972667 23.60322592773621 46-47 22.654434710681656 25.617174869346165 27.314922735646878 24.413467684325298 48-49 22.201564086175132 25.66135278414859 27.82231078693086 24.31477234274542 50-51 21.54566304470429 25.476181524232054 28.246230777907282 24.73192465315637 52-53 21.199571380230854 25.312817235026507 29.61349024326052 23.87412114148212 54-55 20.40418092266045 25.931308042260405 29.07790352295372 24.58660751212543 56-57 20.964770462834153 25.81005376546227 28.244162875512274 24.9810128961913 58-59 20.41376847012821 25.752340489528898 28.993495507012067 24.840395533330828 60-61 20.882618340414332 26.134902432605184 28.07891867503854 24.903560551941947 62-63 19.290333496258977 26.85885626198443 28.257134263262774 25.593675978493813 64-65 19.789449937962928 27.349701094108358 27.212279580403802 25.648569387524912 66-67 19.98909651464451 27.190472609692822 26.701883671090727 26.118547204571946 68-69 19.816896642478472 27.453096213858707 26.446591720870778 26.283415422792046 70-71 20.25999172839042 26.858668270857617 26.406549610858367 26.4747903898936 72-73 19.97762905590856 25.91175696507125 26.472346505244953 27.638267473775237 74-75 19.740384253863215 25.967966311990075 27.01169304808813 27.27995638605858 76 20.129713877504983 25.850283866601497 26.96770312441253 27.052299131480993 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 1.5 12 3.0 13 1.5 14 5.0 15 7.5 16 20.5 17 36.0 18 38.0 19 67.5 20 96.0 21 97.0 22 140.5 23 265.5 24 462.0 25 577.0 26 731.5 27 970.0 28 1362.0 29 1670.0 30 1890.5 31 2353.5 32 3436.0 33 4276.0 34 4688.0 35 5844.0 36 7582.0 37 8576.0 38 9849.0 39 12673.5 40 15302.5 41 16906.5 42 17433.0 43 17890.0 44 18335.0 45 18270.5 46 18218.0 47 18122.0 48 16814.0 49 15061.0 50 14520.0 51 13235.5 52 10627.5 53 8615.0 54 7926.0 55 7309.0 56 6013.0 57 4608.0 58 3882.0 59 3293.0 60 2499.5 61 2093.5 62 1892.0 63 1760.0 64 1563.0 65 1453.0 66 1417.5 67 1427.0 68 1418.5 69 1404.5 70 1344.5 71 1290.0 72 1258.0 73 1256.0 74 1194.0 75 1102.0 76 998.5 77 840.0 78 740.0 79 695.0 80 612.0 81 465.0 82 318.5 83 236.0 84 188.0 85 112.5 86 62.0 87 39.0 88 33.5 89 22.5 90 12.5 91 6.0 92 4.0 93 4.0 94 2.5 95 1.0 96 1.0 97 1.0 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 265970.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.32646539083355 #Duplication Level Percentage of deduplicated Percentage of total 1 59.017751053181144 18.488175358123097 2 17.73425029105006 11.111027559499192 3 7.4544821709334 7.0056773320299275 4 3.57421476493957 4.478700605331428 5 2.0055449537320422 3.141331729142385 6 1.3790371943974362 2.5920216565778094 7 1.0753849662141888 2.3581606948152047 8 0.8233416147577383 2.063390607963304 9 0.711722416255596 2.0066172876640223 >10 5.793396464191841 35.722825882618345 >50 0.3816656464911965 7.923074030905742 >100 0.048008257420276285 2.004737376395834 >500 0.0 0.0 >1k 0.0012002064355069073 1.1042598789337144 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCGT 2937 1.1042598789337144 No Hit TCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCCG 350 0.1315937887731699 No Hit CTCTTATACACATCTCCGAGCCCACGAGACTCTTATTAATCTCGTATGCC 287 0.10790690679399932 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0015039290145505131 0.0 2 0.0 0.0 0.0 0.0015039290145505131 0.0 3 0.0 0.0 0.0 0.0018799112681881416 0.0 4 0.0 0.0 0.0 0.00225589352182577 0.0 5 0.0 0.0 0.0 0.002631875775463398 0.0 6 0.0 0.0 0.0 0.002631875775463398 0.0 7 0.0 0.0 0.0 0.002631875775463398 0.0 8 0.0 0.0 0.0 0.002631875775463398 0.0 9 0.0 0.0 0.0 0.003383840282738655 0.0 10 0.0 0.0 0.0 0.003383840282738655 0.0 11 0.0 0.0 0.0 0.003759822536376283 0.0 12 0.0 0.0 0.0 0.003759822536376283 0.0 13 0.0 0.0 0.0 0.003759822536376283 0.0 14 0.0 0.0 0.0 0.003759822536376283 0.0 15 0.0 0.0 0.0 0.003759822536376283 0.0 16 0.0 0.0 0.0 0.004135804790013911 0.0 17 0.0 0.0 0.0 0.00451178704365154 0.0 18 0.0 0.0 0.0 0.00451178704365154 0.0 19 0.0 0.0 0.0 0.004887769297289168 0.0 20 0.0 0.0 0.0 0.004887769297289168 0.0 21 0.0 0.0 0.0 0.004887769297289168 0.0 22 0.0 0.0 0.0 0.005639733804564425 0.0 23 0.0 0.0 0.0 0.00676768056547731 0.0 24 0.0 0.0 0.0 0.00676768056547731 0.0 25 0.0 0.0 0.0 0.00676768056547731 0.0 26 0.0 0.0 0.0 0.00864759183366545 0.0 27 0.0 0.0 0.0 0.013159378877316991 0.0 28 0.0 0.0 0.0 0.02218295296462007 0.0 29 0.0 0.0 0.0 0.03759822536376283 0.0 30 0.0 0.0 0.0 0.04774974621197879 0.0 31 0.0 0.0 0.0 0.06542091213294733 0.0 32 0.0 0.0 0.0 0.08346806030755348 0.0 33 0.0 0.0 0.0 0.10452306651126067 0.0 34 0.0 0.0 0.0 0.15377674173778996 0.0 35 0.0 0.0 0.0 0.22746926345076512 0.0 36 0.0 0.0 0.0 0.3440237620784299 0.0 37 0.0 0.0 0.0 0.5327668534045193 0.0 38 0.0 0.0 0.0 0.7760273715080648 0.0 39 0.0 0.0 0.0 1.0662856713163138 0.0 40 0.0 0.0 0.0 1.3648155807045907 0.0 41 0.0 0.0 0.0 1.683272549535662 0.0 42 0.0 0.0 0.0 2.0611347144414784 0.0 43 0.0 0.0 0.0 2.510433507538444 0.0 44 0.0 0.0 0.0 3.1056134150468098 0.0 45 0.0 0.0 0.0 3.8372748806256345 0.0 46 0.0 0.0 0.0 4.655036282287476 0.0 47 0.0 0.0 0.0 5.486333045080272 0.0 48 0.0 0.0 0.0 6.239425499116441 0.0 49 0.0 0.0 0.0 6.950407940745197 0.0 50 0.0 0.0 0.0 7.630183855322029 0.0 51 0.0 0.0 0.0 8.284016994397865 0.0 52 0.0 0.0 0.0 8.913035304733617 0.0 53 0.0 0.0 0.0 9.520998608865662 0.0 54 0.0 0.0 0.0 10.2218295296462 0.0 55 0.0 0.0 0.0 10.987329398052411 0.0 56 0.0 0.0 0.0 11.775388201676881 0.0 57 0.0 0.0 0.0 12.616836485317894 0.0 58 0.0 0.0 0.0 13.4082791292251 0.0 59 0.0 0.0 0.0 14.164379441290372 0.0 60 0.0 0.0 0.0 14.902056622927399 0.0 61 0.0 0.0 0.0 15.594615934127908 0.0 62 0.0 0.0 0.0 16.25032898447193 0.0 63 0.0 0.0 0.0 16.887242922134075 0.0 64 0.0 0.0 0.0 17.56777080121818 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AAACTCG 25 2.3876855E-4 55.999996 36 AATATCG 25 2.3876855E-4 55.999996 36 ATATCGT 25 2.3876855E-4 55.999996 37 AGCCACG 20 0.0069461926 52.5 44 CTCTCGG 20 0.0069461926 52.5 32 TCGTATG 425 0.0 51.058823 40 CTCGTAT 395 0.0 50.506332 39 TATGCCG 430 0.0 50.46512 43 ATCGTAT 35 2.0831096E-5 50.0 39 CGTATGC 435 0.0 49.88506 41 CCGTCTT 435 0.0 49.080463 47 CGTCTTC 435 0.0 48.275864 48 ATCTCGT 370 0.0 48.243244 37 GCCGTCT 445 0.0 47.977528 46 AATCTCG 380 0.0 47.894733 36 TCTCGTA 375 0.0 47.599995 38 TCTTCTG 415 0.0 47.228916 50 ATGCCGT 470 0.0 46.914894 44 TAGGTTC 30 5.87121E-4 46.666668 45 AACTCGT 30 5.87121E-4 46.666668 37 >>END_MODULE