FastQCFastQC Report
Wed 25 May 2016
SRR1781130_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1781130_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35764
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAACGTT200.006897342452.57
ATGAGTA200.006897342452.52
TTCATTG200.006897342452.531
ATCTGTC604.8894866E-429.16666666
TGAGTAG500.00711876228.0000023
CCATATA657.808692E-426.9230791
Produced by FastQC (version 0.11.5)