##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781128_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 218757 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.500249134884825 34.0 27.0 34.0 12.0 34.0 2 29.66476501323386 34.0 27.0 34.0 12.0 34.0 3 29.572635389953234 34.0 30.0 34.0 11.0 34.0 4 29.901859140507504 34.0 31.0 34.0 11.0 34.0 5 29.967767888570425 34.0 31.0 34.0 11.0 34.0 6 32.32966716493644 37.0 31.0 38.0 11.0 38.0 7 32.09593750142852 37.0 31.0 38.0 12.0 38.0 8 31.790356422880183 36.0 28.0 38.0 11.0 38.0 9 32.321909698889634 37.0 31.0 38.0 12.0 38.0 10-11 32.03540686698026 37.0 31.0 38.0 11.0 38.0 12-13 32.00257591757064 37.0 31.0 38.0 11.0 38.0 14-15 31.895413632478046 36.5 31.0 38.0 11.0 38.0 16-17 31.835228129842704 36.5 29.5 38.0 11.0 38.0 18-19 31.914357026289444 37.0 31.0 38.0 11.0 38.0 20-21 31.818485808454128 36.5 29.5 38.0 11.0 38.0 22-23 31.920816248165774 37.0 31.0 38.0 11.0 38.0 24-25 31.923351024195796 36.5 31.0 38.0 11.0 38.0 26-27 31.824156484135365 36.0 31.0 38.0 11.0 38.0 28-29 31.930095951215275 37.0 31.0 38.0 11.0 38.0 30-31 32.00162966213652 37.0 31.0 38.0 11.0 38.0 32-33 31.970622654360774 37.0 31.0 38.0 11.0 38.0 34-35 31.976670460830967 37.0 31.0 38.0 11.0 38.0 36-37 31.809416384389984 36.0 29.5 38.0 11.0 38.0 38-39 31.805517080596278 36.0 30.5 38.0 11.0 38.0 40-41 31.78130071266291 36.0 29.0 38.0 11.0 38.0 42-43 31.868751628519316 36.5 31.0 38.0 11.0 38.0 44-45 31.880392398871805 36.5 31.0 38.0 11.0 38.0 46-47 31.873969747253803 36.5 30.5 38.0 11.0 38.0 48-49 31.83902229414373 36.0 30.5 38.0 11.0 38.0 50-51 31.659370900131194 36.0 27.5 38.0 11.0 38.0 52-53 31.763888698418796 36.0 28.5 38.0 11.0 38.0 54-55 31.709264160689713 36.0 27.5 38.0 11.0 38.0 56-57 31.699403904789335 36.0 27.5 38.0 11.0 38.0 58-59 31.682693582376793 36.0 27.5 38.0 11.0 38.0 60-61 31.644841079371176 36.0 27.0 38.0 11.0 38.0 62-63 31.618601919024307 36.0 27.0 38.0 11.0 38.0 64-65 31.640224084257873 36.0 27.0 38.0 11.0 38.0 66-67 31.50157937803133 36.0 27.0 38.0 11.0 38.0 68-69 31.257644326810112 36.0 27.0 38.0 11.0 38.0 70-71 31.4230881754641 36.0 27.0 38.0 11.0 38.0 72-73 31.371279547625903 36.0 27.0 38.0 11.0 38.0 74-75 31.358571382858607 36.0 27.0 38.0 11.0 38.0 76 29.865718582719637 34.0 24.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 25.0 14 95.0 15 250.0 16 719.0 17 1538.0 18 2324.0 19 3259.0 20 3940.0 21 4333.0 22 4874.0 23 5583.0 24 5968.0 25 6694.0 26 7361.0 27 8037.0 28 8615.0 29 9427.0 30 10230.0 31 11264.0 32 12350.0 33 13765.0 34 15929.0 35 19026.0 36 25577.0 37 37571.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.511622485223334 18.127419922562478 9.101423040177 25.259534552037195 2 24.324707323651356 20.313407113829502 30.531137289321027 24.830748273198115 3 19.485547891038916 22.453681482192568 29.420772820984016 28.6399978057845 4 13.657162970784936 16.59375471413486 37.94941419017449 31.79966812490572 5 13.286431977033878 33.986112444401776 36.63014212116641 16.097313457397934 6 29.10581147117578 38.40425677806882 18.379297576763257 14.110634173992146 7 28.782621813244834 29.179866244280184 22.141462901758572 19.896049040716413 8 25.67003570171469 33.832517359444495 19.26841198224514 21.229034956595676 9 24.76492180821642 16.03514401824856 20.968928994272183 38.23100517926284 10-11 25.090625671407086 24.193740086031532 27.811910018879395 22.903724223681984 12-13 25.239420909959453 22.913095352377294 26.477781282427532 25.36970245523572 14-15 23.508733434815802 23.82529473342567 24.004488999209165 28.661482832549357 16-17 23.908263506996345 26.68806026778572 25.01977079590596 24.383905429311977 18-19 23.064633360303898 26.41286907390392 26.333557326165565 24.188940239626618 20-21 23.106003465031975 26.3582422505337 26.41424045859104 24.121513825843287 22-23 23.607016004059297 25.811974016831464 26.629547854468655 23.95146212464058 24-25 23.115374593727285 26.439153947073695 26.42429727962991 24.021174179569112 26-27 22.59653405376742 26.343157018975393 26.835255557536446 24.22505336972074 28-29 23.127259927682314 26.3200720434089 27.363238662077098 23.18942936683169 30-31 23.43102163587908 26.178362292406643 26.795028273380968 23.595587798333312 32-33 22.670588826871825 26.646461598943123 26.693317242419674 23.989632331765385 34-35 23.74095457516788 25.585466979342375 27.049877261070502 23.62370118441924 36-37 23.75169708855031 25.72557678154299 26.31595788934754 24.20676824055916 38-39 23.0612048985861 26.453782050402957 27.029992183107282 23.455020867903656 40-41 23.3178823991918 25.307533016086342 27.491920258551726 23.882664326170133 42-43 22.892296017955996 25.91825633008315 27.080961980645192 24.10848567131566 44-45 22.37436973445421 25.820888017297733 27.174673267598294 24.63006898064976 46-47 22.78281380710103 25.246506397509567 27.39638045868247 24.57429933670694 48-49 22.190147058151283 25.313704247178375 28.044588287460513 24.451560407209826 50-51 22.455967123337768 25.20285065163629 27.588602878993584 24.752579346032356 52-53 22.283401216875344 25.014056693042964 28.07018746828673 24.63235462179496 54-55 21.546281947549105 25.604209236732995 28.184926653775648 24.664582161942246 56-57 21.29130172429556 25.62284005924409 28.233968439722794 24.85188977673755 58-59 21.712090182669275 25.117939622227503 27.808151547843256 25.36181864725996 60-61 21.13519172045567 25.22170820457496 28.11602881749529 25.52707125747408 62-63 20.632805500191996 24.900574155680303 28.700698495126993 25.765921849000712 64-65 21.365585401086143 25.078169284499623 28.01934575508786 25.536899559326372 66-67 21.37518513777908 24.90285980727386 27.54461591910622 26.177339135840842 68-69 20.914169211358775 25.17828082429739 27.34210718791713 26.565442776426707 70-71 21.683241412255178 24.881089247633785 27.443298827691976 25.99237051241906 72-73 21.774895831666715 24.262593340083612 26.97588414515683 26.986626683092847 74-75 21.573579696099763 24.54355537676681 27.014573314560515 26.868291612572914 76 21.927069762339034 24.19442577837509 26.718687859131364 27.159816600154507 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 1.0 12 1.0 13 1.0 14 2.5 15 5.0 16 12.0 17 18.0 18 28.5 19 44.0 20 61.5 21 74.0 22 113.5 23 213.0 24 330.5 25 388.0 26 515.0 27 765.0 28 1028.0 29 1168.0 30 1404.5 31 1882.5 32 2659.0 33 3194.0 34 3604.5 35 4688.5 36 6061.0 37 6760.0 38 7517.5 39 9320.5 40 11289.5 41 12801.0 42 13389.0 43 13731.0 44 14079.5 45 14279.5 46 14473.0 47 14182.0 48 13220.0 49 12047.0 50 11545.0 51 10653.0 52 8964.0 53 7577.5 54 6988.0 55 6384.5 56 5287.0 57 4325.5 58 3858.0 59 3478.5 60 2812.5 61 2383.0 62 2240.0 63 2165.0 64 1995.0 65 1833.0 66 1767.0 67 1768.0 68 1696.0 69 1577.0 70 1502.0 71 1474.0 72 1447.0 73 1326.5 74 1150.0 75 1067.0 76 1020.0 77 877.0 78 714.0 79 647.0 80 578.0 81 433.5 82 323.0 83 288.0 84 227.0 85 134.5 86 88.0 87 73.0 88 60.0 89 34.0 90 20.0 91 14.0 92 9.0 93 7.5 94 5.0 95 3.0 96 2.0 97 2.5 98 1.5 99 1.0 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 4.5712822903952785E-4 58-59 4.5712822903952785E-4 60-61 4.5712822903952785E-4 62-63 4.5712822903952785E-4 64-65 4.5712822903952785E-4 66-67 4.5712822903952785E-4 68-69 4.5712822903952785E-4 70-71 2.2856411451976393E-4 72-73 2.2856411451976393E-4 74-75 4.5712822903952785E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 218757.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.59624417513443 #Duplication Level Percentage of deduplicated Percentage of total 1 77.97206082114022 41.010375497871244 2 10.00934577213907 10.529079885295522 3 3.933689143262812 6.206918240643787 4 1.8821938056482888 3.9598529994721168 5 1.1592637269636066 3.048645902337711 6 0.7640505991528195 2.411171512511967 7 0.6407447787612428 2.3590538186368173 8 0.5155555786337154 2.169302967973729 9 0.3774744091293217 1.7868362573187357 >10 2.6949604853324867 24.809779578402445 >50 0.05066087983639707 1.708983339535975 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0018285129161581114 0.0 5 0.0 0.0 0.0 0.0018285129161581114 0.0 6 0.0 0.0 0.0 0.0018285129161581114 0.0 7 0.0 0.0 0.0 0.0018285129161581114 0.0 8 0.0 0.0 0.0 0.0018285129161581114 0.0 9 0.0 0.0 0.0 0.0018285129161581114 0.0 10 0.0 0.0 0.0 0.0018285129161581114 0.0 11 0.0 0.0 0.0 0.0031998976032766953 4.5712822903952785E-4 12 0.0 0.0 0.0 0.0031998976032766953 4.5712822903952785E-4 13 0.0 0.0 0.0 0.0031998976032766953 4.5712822903952785E-4 14 0.0 0.0 0.0 0.003657025832316223 4.5712822903952785E-4 15 0.0 0.0 0.0 0.004114154061355751 4.5712822903952785E-4 16 0.0 0.0 0.0 0.004571282290395278 4.5712822903952785E-4 17 0.0 0.0 0.0 0.004571282290395278 4.5712822903952785E-4 18 0.0 0.0 0.0 0.0050284105194348064 4.5712822903952785E-4 19 0.0 0.0 0.0 0.0054855387484743345 4.5712822903952785E-4 20 0.0 0.0 0.0 0.0063997952065533905 4.5712822903952785E-4 21 0.0 0.0 0.0 0.0068569234355929185 4.5712822903952785E-4 22 0.0 0.0 0.0 0.008228308122711503 4.5712822903952785E-4 23 0.0 0.0 0.0 0.009142564580790557 4.5712822903952785E-4 24 0.0 0.0 0.0 0.010971077496948669 4.5712822903952785E-4 25 0.0 0.0 0.0 0.011885333955027725 4.5712822903952785E-4 26 0.0 0.0 0.0 0.012799590413106781 4.5712822903952785E-4 27 0.0 0.0 0.0 0.020113642077739226 4.5712822903952785E-4 28 0.0 0.0 0.0 0.026513437284292618 4.5712822903952785E-4 29 0.0 0.0 0.0 0.033827488948925066 4.5712822903952785E-4 30 0.0 0.0 0.0 0.04022728415547845 4.5712822903952785E-4 31 0.0 0.0 0.0 0.05211261811050618 4.5712822903952785E-4 32 0.0 0.0 0.0 0.06354082383649437 4.5712822903952785E-4 33 0.0 0.0 0.0 0.07862605539479879 4.5712822903952785E-4 34 0.0 0.0 0.0 0.11153928788564481 4.5712822903952785E-4 35 0.0 0.0 0.0 0.16456616245423003 4.5712822903952785E-4 36 0.0 0.0 0.0 0.23907806378767307 4.5712822903952785E-4 37 0.0 0.0 0.0 0.3625026856283456 4.5712822903952785E-4 38 0.0 0.0 0.0 0.5252403351664175 4.5712822903952785E-4 39 0.0 0.0 0.0 0.7236339865695727 4.5712822903952785E-4 40 0.0 0.0 0.0 0.9471696905699017 4.5712822903952785E-4 41 0.0 0.0 0.0 1.2004187294578001 4.5712822903952785E-4 42 0.0 0.0 0.0 1.4847524879203866 4.5712822903952785E-4 43 0.0 0.0 0.0 1.8399411218840998 4.5712822903952785E-4 44 0.0 0.0 0.0 2.262784733745663 4.5712822903952785E-4 45 0.0 0.0 0.0 2.781168145476488 4.5712822903952785E-4 46 0.0 0.0 0.0 3.360806739898609 4.5712822903952785E-4 47 0.0 0.0 0.0 4.014957235654173 4.5712822903952785E-4 48 0.0 0.0 0.0 4.654936756309512 4.5712822903952785E-4 49 0.0 0.0 0.0 5.201662118240788 4.5712822903952785E-4 50 0.0 0.0 0.0 5.71273147830698 4.5712822903952785E-4 51 0.0 0.0 0.0 6.199115914005038 4.5712822903952785E-4 52 0.0 0.0 0.0 6.685957477932135 4.5712822903952785E-4 53 0.0 0.0 0.0 7.152228271552453 4.5712822903952785E-4 54 0.0 0.0 0.0 7.722724301393784 4.5712822903952785E-4 55 0.0 0.0 0.0 8.358132539758728 4.5712822903952785E-4 56 0.0 0.0 0.0 8.99399790635271 4.5712822903952785E-4 57 0.0 0.0 0.0 9.64357711981788 4.5712822903952785E-4 58 0.0 0.0 0.0 10.277613973495706 4.5712822903952785E-4 59 0.0 0.0 0.0 10.909365186028333 4.5712822903952785E-4 60 0.0 0.0 0.0 11.536087988041526 4.5712822903952785E-4 61 0.0 0.0 0.0 12.104755504966699 4.5712822903952785E-4 62 0.0 0.0 0.0 12.678908560640345 4.5712822903952785E-4 63 0.0 0.0 0.0 13.228376691945858 4.5712822903952785E-4 64 0.0 0.0 0.0 13.798415593558149 4.5712822903952785E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATCACG 20 0.006944552 52.5 45 GATCATA 20 0.006944552 52.5 1 ATTTGCG 30 5.868912E-4 46.666664 31 CGACGAA 75 7.512426E-10 42.0 70 ACTATCG 35 0.0012535414 40.0 17 TTTTACG 45 9.177487E-5 38.88889 50 GATTTGC 50 1.7059683E-4 35.000004 30 CGTAGTG 50 1.7059683E-4 35.000004 54 GGTACCC 40 0.0024151679 35.0 16 GGCAAGC 40 0.0024151679 35.0 13 TTGCGTT 40 0.0024151679 35.0 33 GGGCATA 40 0.0024151679 35.0 47 GCCGTTT 40 0.0024151679 35.0 12 TCTAGCA 75 1.4845336E-6 32.666668 3 AGCCTCG 55 2.9855943E-4 31.81818 10 TTTAGAA 45 0.0043009124 31.111113 32 AAAGTCC 45 0.0043009124 31.111113 29 ACGATTC 45 0.0043009124 31.111113 65 GGCGCTA 45 0.0043009124 31.111113 8 GCGCTAT 45 0.0043009124 31.111113 9 >>END_MODULE