##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781128_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 197576 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.31308964651577 34.0 34.0 34.0 33.0 34.0 2 33.304470178564195 34.0 34.0 34.0 33.0 34.0 3 33.35308944406203 34.0 34.0 34.0 33.0 34.0 4 33.423720492367494 34.0 34.0 34.0 34.0 34.0 5 33.40869842490991 34.0 34.0 34.0 34.0 34.0 6 36.850513220229175 38.0 37.0 38.0 34.0 38.0 7 36.75815382435113 38.0 37.0 38.0 34.0 38.0 8 36.56965927035672 38.0 37.0 38.0 34.0 38.0 9 36.5118890958416 38.0 37.0 38.0 34.0 38.0 10-11 36.41709519374823 38.0 37.0 38.0 34.0 38.0 12-13 36.348453253431586 38.0 37.0 38.0 34.0 38.0 14-15 36.36222263837713 38.0 37.0 38.0 34.0 38.0 16-17 36.31463588694983 38.0 37.0 38.0 34.0 38.0 18-19 36.31630106895574 38.0 37.0 38.0 34.0 38.0 20-21 36.24322286107625 38.0 37.0 38.0 34.0 38.0 22-23 36.31836862776856 38.0 37.0 38.0 34.0 38.0 24-25 36.298669878932664 38.0 37.0 38.0 34.0 38.0 26-27 36.07008948455278 38.0 37.0 38.0 33.0 38.0 28-29 36.07996416568814 38.0 37.0 38.0 33.0 38.0 30-31 36.0947711260477 38.0 37.0 38.0 32.5 38.0 32-33 36.050249018099365 38.0 37.0 38.0 32.0 38.0 34-35 36.058536968052806 38.0 37.0 38.0 32.5 38.0 36-37 36.01658602259384 38.0 37.0 38.0 32.0 38.0 38-39 35.95202605579625 38.0 37.0 38.0 32.0 38.0 40-41 36.01016317771389 38.0 37.0 38.0 32.0 38.0 42-43 36.008169008381586 38.0 37.0 38.0 32.0 38.0 44-45 35.99043912216059 38.0 37.0 38.0 32.0 38.0 46-47 36.00429201927359 38.0 37.0 38.0 32.0 38.0 48-49 35.99016327894076 38.0 37.0 38.0 32.0 38.0 50-51 35.88124569785804 38.0 36.5 38.0 31.5 38.0 52-53 35.908986921488435 38.0 37.0 38.0 32.0 38.0 54-55 35.922447564481516 38.0 37.0 38.0 32.0 38.0 56-57 35.88099769202737 38.0 37.0 38.0 32.0 38.0 58-59 35.87581993764425 38.0 37.0 38.0 31.5 38.0 60-61 35.861068652063004 38.0 36.5 38.0 31.5 38.0 62-63 35.841068753289875 38.0 36.5 38.0 31.0 38.0 64-65 35.796356844960926 38.0 36.0 38.0 31.0 38.0 66-67 35.773115155686924 38.0 36.0 38.0 31.0 38.0 68-69 35.704265700287486 38.0 36.0 38.0 31.0 38.0 70-71 35.5698895614852 38.0 36.0 38.0 31.0 38.0 72-73 35.46905494594485 38.0 36.0 38.0 31.0 38.0 74-75 35.47181590881483 38.0 36.0 38.0 31.0 38.0 76 34.58201907114224 37.0 34.0 38.0 26.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 4.0 21 6.0 22 27.0 23 52.0 24 125.0 25 269.0 26 483.0 27 977.0 28 1607.0 29 2513.0 30 3848.0 31 5804.0 32 8387.0 33 11698.0 34 16011.0 35 22422.0 36 34077.0 37 89265.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.26270397214237 17.781005790176945 9.261246305219258 26.69504393246143 2 24.26914200105276 20.04595699882577 30.866603231161683 24.818297768959795 3 19.778211928574322 22.1342673199174 29.574442239948173 28.51307851156011 4 13.659553791958537 17.798720492367494 37.015629428675545 31.526096286998424 5 13.126088188848847 34.338178726161075 37.034862533911 15.50087055107908 6 29.623537271733408 39.21022796291048 17.41760132809653 13.748633437259587 7 28.88964246669636 29.660991213507714 21.159452565088877 20.28991375470705 8 25.552698708345144 35.5296189820626 18.83325910029558 20.084423209296677 9 24.602684536583393 15.720026723893591 20.23018990160748 39.44709883791553 10-11 24.71732396647366 25.15437097623193 27.84700570919545 22.28129934809896 12-13 24.989624245859822 22.82514070534883 26.683402842450498 25.50183220634085 14-15 23.01620642183261 23.71745556140422 23.131098918897035 30.13523909786614 16-17 24.362776855488523 27.461078268615623 24.31266955500668 23.863475320889176 18-19 23.79388184799773 26.46196906506863 25.60154067295623 24.142608413977406 20-21 22.775286472041138 26.388326517390777 25.45121877151071 25.385168239057375 22-23 23.006083734866582 26.704660485079156 25.95507551524477 24.33418026480949 24-25 23.83639713325505 27.10298821719237 25.677207758027293 23.383406891525286 26-27 23.15969550957606 27.322397457181037 25.94672429849779 23.57118273474511 28-29 23.769081264930964 26.003664412681704 26.74059602380856 23.486658298578774 30-31 24.026956715390533 25.956087783941367 26.922298254848766 23.09465724581933 32-33 22.558914038142284 27.339606025023283 25.856632384500145 24.244847552334292 34-35 23.5137364862129 25.690873385431427 27.802212819370776 22.993177308984897 36-37 23.338867068874762 26.454377049844112 26.69504393246143 23.511711948819695 38-39 22.51715795440742 26.523464388387254 27.06755881281127 23.891818844394056 40-41 22.710501275458558 25.249524233712595 27.882688180750698 24.157286310078145 42-43 23.60180386281735 25.438312345629022 27.236607685143944 23.723276106409685 44-45 22.060877839413696 26.851692513260723 27.243693566020166 23.843736081305423 46-47 23.364679920638135 25.173857148641538 26.544975098190065 24.91648783253027 48-49 22.742387739401547 25.038466210470904 27.298103008462565 24.92104304166498 50-51 22.039367129610884 25.146019759484954 27.773616228691743 25.04099688221241 52-53 21.662803174474632 24.693535652103492 29.368192493015343 24.27546868040653 54-55 20.9359942503138 25.5190407741831 28.55027938616026 24.994685589342836 56-57 21.692412033850264 25.346702028586463 27.44943717860469 25.511448758958576 58-59 21.004322387334497 25.08654897355954 28.84333117382678 25.065797465279182 60-61 21.507926063894402 25.982659837227196 27.35479005547232 25.15462404340608 62-63 19.625865489735595 26.762865935133824 27.823723529173584 25.787545045957 64-65 20.389116086974127 26.99062639186946 27.002520549054545 25.617736972101874 66-67 20.403793983074866 26.904583552658217 26.514353970117828 26.177268494149086 68-69 20.411385998299387 27.43096327489169 25.840436085354497 26.317214641454427 70-71 20.90258938332591 26.925081993764426 25.844991294489212 26.32733732842046 72-73 20.8820909422197 25.69492246021784 25.763250597238528 27.659736000323925 74-75 20.890948293314977 25.58762197837794 26.017583107259988 27.50384662104709 76 21.44390006883427 25.59976920273718 25.822974450338098 27.133356278090453 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.5 11 0.5 12 0.0 13 0.0 14 0.5 15 3.0 16 8.0 17 11.0 18 21.5 19 51.0 20 64.0 21 58.0 22 82.5 23 184.5 24 335.5 25 409.0 26 542.5 27 726.0 28 912.0 29 1048.0 30 1288.0 31 1664.5 32 2333.5 33 2866.0 34 3262.5 35 4108.5 36 5287.5 37 6017.0 38 6693.0 39 8419.5 40 10666.0 41 12370.5 42 12879.0 43 13186.0 44 13367.5 45 13167.0 46 13092.0 47 12805.5 48 11753.5 49 10678.5 50 10369.0 51 9418.0 52 7627.5 53 6441.0 54 6094.0 55 5597.0 56 4607.0 57 3728.0 58 3342.0 59 2927.5 60 2310.0 61 1982.5 62 1858.0 63 1799.0 64 1676.0 65 1580.0 66 1536.5 67 1525.0 68 1512.5 69 1479.0 70 1378.5 71 1299.0 72 1321.5 73 1262.0 74 1110.5 75 1041.0 76 984.5 77 858.5 78 709.0 79 629.0 80 569.0 81 430.0 82 290.5 83 230.0 84 187.5 85 121.5 86 70.0 87 42.0 88 35.0 89 23.0 90 12.0 91 5.0 92 4.0 93 2.0 94 0.5 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 197576.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.15279183706523 #Duplication Level Percentage of deduplicated Percentage of total 1 60.8623390777195 22.612058144713934 2 17.99332470540154 13.370044944730127 3 7.231115046658947 8.059683362351702 4 3.3608064845718952 4.994533749038345 5 1.9290239084531025 3.583431185974005 6 1.3500442749131532 3.0094748350002023 7 1.0571486955929432 2.749321779973276 8 0.7819630815339553 2.324168927400089 9 0.6770655949867175 2.263938939952221 >10 4.571895647435461 30.94151111471029 >50 0.1743750425720319 4.175102239138357 >100 0.009536135140657993 0.5532048426934446 >500 0.0 0.0 >1k 0.0013623050200939992 1.363525934324007 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCGT 2694 1.363525934324007 No Hit TCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCCG 265 0.13412560229987447 No Hit CTCTTATACACATCTCCGAGCCCACGAGACGGTCATTTATCTCGTATGCC 217 0.10983115358140666 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0010122686966028262 0.0 2 0.0 0.0 0.0 0.0010122686966028262 0.0 3 0.0 0.0 0.0 0.0010122686966028262 0.0 4 0.0 0.0 0.0 0.0025306717415070658 0.0 5 0.0 0.0 0.0 0.0025306717415070658 0.0 6 0.0 0.0 0.0 0.0025306717415070658 0.0 7 0.0 0.0 0.0 0.0025306717415070658 0.0 8 0.0 0.0 0.0 0.0025306717415070658 0.0 9 0.0 0.0 0.0 0.0025306717415070658 0.0 10 0.0 0.0 0.0 0.0025306717415070658 0.0 11 0.0 0.0 0.0 0.004049074786411305 0.0 12 0.0 0.0 0.0 0.004049074786411305 0.0 13 0.0 0.0 0.0 0.004555209134712718 0.0 14 0.0 0.0 0.0 0.004555209134712718 0.0 15 0.0 0.0 0.0 0.0055674778313155445 0.0 16 0.0 0.0 0.0 0.0065797465279183705 0.0 17 0.0 0.0 0.0 0.0065797465279183705 0.0 18 0.0 0.0 0.0 0.0070858808762197835 0.0 19 0.0 0.0 0.0 0.0075920152245211965 0.0 20 0.0 0.0 0.0 0.008604283921124023 0.0 21 0.0 0.0 0.0 0.009110418269425435 0.0 22 0.0 0.0 0.0 0.009110418269425435 0.0 23 0.0 0.0 0.0 0.011134955662631089 0.0 24 0.0 0.0 0.0 0.011641090010932501 0.0 25 0.0 0.0 0.0 0.012653358707535329 0.0 26 0.0 0.0 0.0 0.013665627404138155 0.0 27 0.0 0.0 0.0 0.025306717415070658 0.0 28 0.0 0.0 0.0 0.03542940438109892 0.0 29 0.0 0.0 0.0 0.046564360043730005 0.0 30 0.0 0.0 0.0 0.05820545005466251 0.0 31 0.0 0.0 0.0 0.07592015224521197 0.0 32 0.0 0.0 0.0 0.09110418269425437 0.0 33 0.0 0.0 0.0 0.1118556909746123 0.0 34 0.0 0.0 0.0 0.16145685710815078 0.0 35 0.0 0.0 0.0 0.23383406891525285 0.0 36 0.0 0.0 0.0 0.338097744665344 0.0 37 0.0 0.0 0.0 0.5167631696157428 0.0 38 0.0 0.0 0.0 0.7242782524193222 0.0 39 0.0 0.0 0.0 0.98139450135644 0.0 40 0.0 0.0 0.0 1.2658420051018342 0.0 41 0.0 0.0 0.0 1.5897679880147386 0.0 42 0.0 0.0 0.0 1.954184718791756 0.0 43 0.0 0.0 0.0 2.4076810948698224 0.0 44 0.0 0.0 0.0 2.9492448475523343 0.0 45 0.0 0.0 0.0 3.59962748511965 0.0 46 0.0 0.0 0.0 4.326942543628781 0.0 47 0.0 0.0 0.0 5.128153216989918 0.0 48 0.0 0.0 0.0 5.9116491881605056 0.0 49 0.0 0.0 0.0 6.586326274446289 0.0 50 0.0 0.0 0.0 7.218488075474754 0.0 51 0.0 0.0 0.0 7.821800218650038 0.0 52 0.0 0.0 0.0 8.437259586184556 0.0 53 0.0 0.0 0.0 9.024375430214196 0.0 54 0.0 0.0 0.0 9.721322427825243 0.0 55 0.0 0.0 0.0 10.490140502895088 0.0 56 0.0 0.0 0.0 11.263007652751346 0.0 57 0.0 0.0 0.0 12.094080252662266 0.0 58 0.0 0.0 0.0 12.870996477304935 0.0 59 0.0 0.0 0.0 13.661578329351743 0.0 60 0.0 0.0 0.0 14.415718508320849 0.0 61 0.0 0.0 0.0 15.098493744179455 0.0 62 0.0 0.0 0.0 15.768109486982224 0.0 63 0.0 0.0 0.0 16.41444304976313 0.0 64 0.0 0.0 0.0 17.08152812082439 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCAG 15 0.0022221704 70.00001 46 TATGCCG 395 0.0 59.367092 43 TCGTATG 390 0.0 59.23077 40 CGTATGC 395 0.0 58.481014 41 CTCGTAT 390 0.0 58.333332 39 TCTCGTA 375 0.0 57.86667 38 GCCGTCT 400 0.0 57.749996 46 ATCTCGT 380 0.0 57.10526 37 GATAAGC 25 2.386177E-4 55.999996 53 GTAGACA 25 2.386177E-4 55.999996 4 ATGCCGT 415 0.0 55.66265 44 TGCCGTC 415 0.0 55.66265 45 CCGTCTT 410 0.0 55.487804 47 TCTTCTG 400 0.0 54.249996 50 CTGCTTG 400 0.0 53.374996 54 CGCACCG 20 0.006943561 52.5 10 CGTCTTC 435 0.0 52.29885 48 TATCTCG 415 0.0 52.289158 36 CATTTAT 420 0.0 51.666664 32 TTATCTC 415 0.0 51.445786 35 >>END_MODULE