##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781126_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 618437 Sequences flagged as poor quality 0 Sequence length 76 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.028390927450978 34.0 32.0 34.0 21.0 34.0 2 31.260244778368694 34.0 32.0 34.0 23.0 34.0 3 31.32272163534847 34.0 33.0 34.0 23.0 34.0 4 31.411270671062695 34.0 33.0 34.0 23.0 34.0 5 31.480703774192037 34.0 33.0 34.0 23.0 34.0 6 34.33437520717551 37.0 34.0 38.0 25.0 38.0 7 34.28053948906679 37.0 34.0 38.0 24.0 38.0 8 34.05061307780744 37.0 34.0 38.0 24.0 38.0 9 34.349367841833526 37.0 34.0 38.0 25.0 38.0 10-11 34.217719832416236 37.0 34.0 38.0 24.0 38.0 12-13 34.18039428430058 37.0 34.0 38.0 24.0 38.0 14-15 34.05885401423265 37.0 34.0 38.0 24.0 38.0 16-17 34.019723916906656 37.0 34.0 38.0 23.5 38.0 18-19 34.07753336233117 37.0 34.0 38.0 24.0 38.0 20-21 34.002872564222386 37.0 34.0 38.0 23.5 38.0 22-23 34.082533871679736 37.0 34.0 38.0 24.0 38.0 24-25 34.06532678348805 37.0 34.0 38.0 24.0 38.0 26-27 33.99816311119807 37.0 34.0 38.0 23.5 38.0 28-29 34.09586425133037 37.0 34.0 38.0 24.0 38.0 30-31 34.16482762189196 37.0 34.0 38.0 24.0 38.0 32-33 34.12081101227773 37.0 34.0 38.0 24.0 38.0 34-35 34.14781052880083 37.0 34.0 38.0 24.0 38.0 36-37 34.00344174103425 37.0 34.0 38.0 23.5 38.0 38-39 34.01347429083319 37.0 34.0 38.0 24.0 38.0 40-41 33.99813966499417 37.0 34.0 38.0 24.0 38.0 42-43 34.08780926755676 37.0 34.0 38.0 24.0 38.0 44-45 34.0857726817768 37.0 34.0 38.0 24.0 38.0 46-47 34.0748920261886 37.0 34.0 38.0 24.0 38.0 48-49 34.01300617524501 37.0 34.0 38.0 24.0 38.0 50-51 33.883462664750006 37.0 34.0 38.0 23.5 38.0 52-53 33.964135392934125 37.0 34.0 38.0 24.0 38.0 54-55 33.92640964237263 37.0 34.0 38.0 24.0 38.0 56-57 33.89365772099664 37.0 34.0 38.0 23.5 38.0 58-59 33.89341436556998 37.0 34.0 38.0 23.5 38.0 60-61 33.87199827953373 37.0 34.0 38.0 23.5 38.0 62-63 33.84372620008182 37.0 34.0 38.0 23.0 38.0 64-65 33.846974712056365 37.0 34.0 38.0 23.0 38.0 66-67 33.751379687825924 37.0 34.0 38.0 23.0 38.0 68-69 33.53881802026722 37.0 34.0 38.0 22.5 38.0 70-71 33.68081874144011 37.0 34.0 38.0 23.0 38.0 72-73 33.65668693820066 37.0 34.0 38.0 23.0 38.0 74-75 33.67498629609807 37.0 34.0 38.0 23.0 38.0 76 32.461927407318775 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 2.0 13 29.0 14 117.0 15 252.0 16 658.0 17 1252.0 18 2164.0 19 3055.0 20 3859.0 21 4904.0 22 6018.0 23 7352.0 24 8948.0 25 10488.0 26 12374.0 27 14414.0 28 16958.0 29 19812.0 30 23115.0 31 27190.0 32 31785.0 33 37771.0 34 46842.0 35 60502.0 36 89786.0 37 188789.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.384939775595576 18.33250597878199 9.372822130629311 24.90973211499312 2 22.86053389431745 21.72557592770161 31.549050267044176 23.864839910936762 3 19.811395501886206 22.157956267170302 30.742177457040892 27.288470773902596 4 14.186893733719035 17.071908698865045 36.543576791168704 32.19762077624721 5 14.30606512870349 32.84667637932401 35.68867968766423 17.15857880430828 6 29.570675751935926 36.65902913312108 19.33681199540131 14.433483119541684 7 27.771785970114983 30.83078793797913 22.142918357084067 19.254507734821814 8 24.930429453606433 35.03056899894411 21.050486953400267 18.988514594049192 9 24.44905463288904 17.326582982583513 22.2638684296056 35.96049395492184 10-11 24.269246503685903 25.18275911693511 28.252109754105913 22.295884625273068 12-13 24.776897242564726 23.53449098291338 27.85392853273656 23.83468324178534 14-15 22.74532409930195 24.666700084244635 25.21000522284404 27.377970593609373 16-17 22.428638648722504 28.51672846223625 25.79219872032236 23.262434168718883 18-19 21.740937233703676 27.859507112284682 27.702660093105685 22.69689556090596 20-21 22.591872737239203 27.706055750221932 27.2301786600737 22.471892852465167 22-23 22.390073685759422 27.28838992492364 27.46100249499949 22.86053389431745 24-25 22.371801816514857 27.371906920187506 27.22387243971496 23.032418823582677 26-27 21.746515813251794 27.404165662791847 27.69772830538923 23.15159021856713 28-29 21.788880678225915 27.50441839670007 28.147410326354986 22.559290598719027 30-31 22.33032629030928 27.774615684378524 27.427126772815985 22.46793125249621 32-33 21.82784988608379 27.830805724754505 27.67735436269175 22.663990026469953 34-35 22.003534717360054 27.063063820567013 28.089360759462966 22.844040702609966 36-37 22.245192315466248 27.83185676148096 27.342882136741498 22.580068786311298 38-39 22.00652612958151 27.838486377755533 27.89532320996318 22.259664282699774 40-41 21.98995208889507 27.24764203952868 28.18225623628599 22.580149635290255 42-43 21.83148809013691 27.192179639963328 28.01190743762097 22.964424832278794 44-45 21.803999437291107 27.120870840522155 28.058153053585087 23.01697666860165 46-47 21.85226627772918 27.388966054747694 28.064459273943832 22.6943083935793 48-49 21.410264909764454 27.42462045446828 28.41906289565469 22.746051740112573 50-51 21.665020042461883 27.13809167304026 28.28558123139463 22.91130705310323 52-53 21.43104309735672 26.984397764040637 28.61358553902823 22.97097359957441 54-55 21.31922895945747 27.220234235661838 28.423428740518435 23.037108064362254 56-57 21.26298036653871 27.041527470999334 28.42591125326227 23.26958090919969 58-59 21.016938738055526 26.706385235623177 28.880908164082047 23.39576786223925 60-61 21.21492153581217 26.997259210749714 28.42416745494676 23.363651798491354 62-63 20.991356414694824 27.050436140874833 28.47960700832989 23.47860043610045 64-65 21.107149498330465 26.67960254513409 28.42408660570634 23.789161350829108 66-67 21.067954650007398 26.7519033947815 28.26135993383293 23.918782021378174 68-69 21.28834985758395 26.723525288450112 28.023986372041016 23.964138481924923 70-71 21.700294615108483 26.474773379212657 27.935964064071513 23.88896794160735 72-73 21.357880260561142 26.324857361612263 28.045653985992047 24.271608391834544 74-75 21.536701512689287 26.158044095175725 27.89856654296733 24.406687849167657 76 21.634054883520875 26.25570591668998 27.368996356945008 24.741242842844137 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 1.0 6 1.5 7 2.5 8 4.0 9 2.5 10 2.0 11 10.0 12 17.0 13 38.0 14 76.5 15 152.0 16 307.5 17 405.0 18 555.5 19 869.0 20 1424.5 21 1817.0 22 2170.5 23 3119.0 24 4189.0 25 4664.0 26 5404.0 27 6847.5 28 8591.0 29 9631.0 30 10463.0 31 12497.0 32 14949.0 33 16199.0 34 17267.0 35 19603.0 36 22334.0 37 23797.0 38 24833.0 39 26970.5 40 28917.5 41 30157.5 42 30552.0 43 30700.5 44 30740.0 45 30123.5 46 29616.0 47 29115.5 48 27692.5 49 25977.5 50 25185.0 51 24167.5 52 22222.5 53 20798.5 54 20302.0 55 19645.0 56 18390.0 57 16828.5 58 15865.0 59 14641.5 60 12232.5 61 9898.0 62 8749.0 63 7974.0 64 6465.0 65 5229.0 66 4381.0 67 4035.0 68 3611.5 69 2923.5 70 2433.5 71 2208.0 72 2067.5 73 1716.0 74 1382.0 75 1259.0 76 1163.0 77 990.0 78 788.5 79 664.0 80 628.5 81 500.0 82 371.5 83 336.0 84 302.0 85 208.5 86 125.5 87 102.0 88 89.0 89 56.0 90 28.0 91 19.0 92 18.0 93 12.5 94 8.5 95 10.0 96 10.0 97 5.5 98 2.5 99 9.5 100 15.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 4.850938737494684E-4 58-59 4.042448947912237E-4 60-61 3.2339591583297893E-4 62-63 2.425469368747342E-4 64-65 3.2339591583297893E-4 66-67 4.042448947912237E-4 68-69 4.042448947912237E-4 70-71 4.850938737494684E-4 72-73 4.042448947912237E-4 74-75 3.2339591583297893E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 618437.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 68.09593339199881 #Duplication Level Percentage of deduplicated Percentage of total 1 74.01575169491547 50.40171697375687 2 17.064825327031834 23.240904176313087 3 5.581356329877918 11.40203006629133 4 1.7146940538330921 4.670547683098987 5 0.5714834632981086 1.9457849925688404 6 0.24982939892389255 1.0207419665090693 7 0.15134270801291555 0.7214076074948557 8 0.10537155367604048 0.5740299440428065 9 0.07770332866175993 0.47621526235990164 >10 0.4612243051142421 5.277282560600062 >50 0.006417836654743643 0.2693387669642999 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 3.2339591583297893E-4 0.0 2 0.0 0.0 0.0 3.2339591583297893E-4 0.0 3 0.0 0.0 0.0 3.2339591583297893E-4 0.0 4 0.0 0.0 0.0 3.2339591583297893E-4 0.0 5 0.0 0.0 0.0 3.2339591583297893E-4 0.0 6 0.0 0.0 0.0 3.2339591583297893E-4 0.0 7 0.0 0.0 0.0 4.850938737494684E-4 0.0 8 0.0 0.0 0.0 4.850938737494684E-4 0.0 9 0.0 0.0 0.0 6.467918316659579E-4 0.0 10 0.0 0.0 0.0 6.467918316659579E-4 0.0 11 0.0 0.0 0.0 6.467918316659579E-4 0.0 12 0.0 4.850938737494684E-4 0.0 8.084897895824474E-4 0.0 13 0.0 4.850938737494684E-4 0.0 0.0012935836633319157 0.0 14 0.0 4.850938737494684E-4 0.0 0.0012935836633319157 0.0 15 0.0 4.850938737494684E-4 0.0 0.0012935836633319157 0.0 16 0.0 4.850938737494684E-4 0.0 0.0016169795791648948 0.0 17 0.0 4.850938737494684E-4 0.0 0.0016169795791648948 0.0 18 0.0 4.850938737494684E-4 0.0 0.0017786775370813841 0.0 19 0.0 4.850938737494684E-4 0.0 0.0019403754949978737 0.0 20 0.0 4.850938737494684E-4 0.0 0.002102073452914363 0.0 21 0.0 4.850938737494684E-4 0.0 0.002748865284580321 0.0 22 0.0 4.850938737494684E-4 0.0 0.0030722612004133 0.0 23 0.0 4.850938737494684E-4 0.0 0.003395657116246279 0.0 24 0.0 4.850938737494684E-4 0.0 0.004204146905828726 0.0 25 0.0 4.850938737494684E-4 0.0 0.004365844863745216 0.0 26 0.0 4.850938737494684E-4 0.0 0.004850938737494684 0.0 27 0.0 4.850938737494684E-4 0.0 0.0063062203587430895 0.0 28 0.0 4.850938737494684E-4 0.0 0.013097534591235646 0.0 29 0.0 4.850938737494684E-4 0.0 0.020859036571227143 0.0 30 0.0 4.850938737494684E-4 0.0 0.028620538551218638 0.0 31 0.0 4.850938737494684E-4 0.0 0.03783732215245854 0.0 32 0.0 4.850938737494684E-4 0.0 0.04931787716452929 0.0 33 0.0 4.850938737494684E-4 0.0 0.06370899541909686 0.0 34 0.0 4.850938737494684E-4 0.0 0.08828708502240325 0.0 35 0.0 4.850938737494684E-4 0.0 0.12418403167986392 0.0 36 0.0 4.850938737494684E-4 0.0 0.17932303532938682 0.0 37 0.0 4.850938737494684E-4 0.0 0.2797374671955268 0.0 38 0.0 4.850938737494684E-4 0.0 0.41831261712995826 0.0 39 0.0 4.850938737494684E-4 0.0 0.5741894485614542 0.0 40 0.0 4.850938737494684E-4 0.0 0.7643462470712458 0.0 41 0.0 4.850938737494684E-4 0.0 0.9608092659397804 0.0 42 0.0 4.850938737494684E-4 0.0 1.1792632070849578 0.0 43 0.0 4.850938737494684E-4 0.0 1.406287139999709 0.0 44 0.0 4.850938737494684E-4 0.0 1.6797183868364927 0.0 45 0.0 4.850938737494684E-4 0.0 1.9846807354669918 0.0 46 0.0 4.850938737494684E-4 0.0 2.318425320606626 0.0 47 0.0 4.850938737494684E-4 0.0 2.660254803642085 0.0 48 0.0 4.850938737494684E-4 0.0 3.0231050212066872 0.0 49 0.0 4.850938737494684E-4 0.0 3.387087124476705 0.0 50 0.0 4.850938737494684E-4 0.0 3.75026073795714 0.0 51 0.0 4.850938737494684E-4 0.0 4.1140811432692415 0.0 52 0.0 4.850938737494684E-4 0.0 4.4428130917134645 0.0 53 0.0 4.850938737494684E-4 0.0 4.78755313799142 0.0 54 0.0 4.850938737494684E-4 0.0 5.126633755742299 0.0 55 0.0 4.850938737494684E-4 0.0 5.473960969346918 0.0 56 0.0 4.850938737494684E-4 0.0 5.846189668470677 0.0 57 0.0 4.850938737494684E-4 0.0 6.2061293227927825 0.0 58 0.0 4.850938737494684E-4 0.0 6.5870897116440315 0.0 59 0.0 4.850938737494684E-4 0.0 6.944442198639473 0.0 60 0.0 4.850938737494684E-4 0.0 7.335266162923628 1.6169795791648946E-4 61 0.0 4.850938737494684E-4 0.0 7.682431678570332 1.6169795791648946E-4 62 0.0 4.850938737494684E-4 0.0 8.038328883944525 1.6169795791648946E-4 63 0.0 4.850938737494684E-4 0.0 8.375307428242488 1.6169795791648946E-4 64 0.0 4.850938737494684E-4 0.0 8.714064650077534 1.6169795791648946E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTGCGG 20 0.006950526 52.5 65 CTAGCCG 50 0.007207835 27.999998 42 TCGTTGA 85 1.308065E-4 24.705883 41 GATTTCG 80 0.0026657672 21.875 28 GGTTTAG 240 2.3646862E-11 20.416668 1 GTGCTAA 90 0.005274163 19.444443 1 AGTGCGA 95 0.007206931 18.421051 22 GGTTCTA 135 1.4111058E-4 18.148148 1 ATCCGTG 235 7.912604E-9 17.87234 70 GGTGTAT 255 1.1241355E-9 17.843138 1 TCTATAC 275 1.6007107E-10 17.81818 3 GTGGCGA 100 0.009685461 17.5 34 GGTCTAG 285 2.6557245E-10 17.192982 1 GTTTAGG 195 7.823888E-6 16.153847 2 GTAGACC 130 0.0022891897 16.153847 3 GTGTAAA 265 3.4853656E-8 15.849055 1 CTATACT 385 5.456968E-12 15.454545 4 GACGATC 615 0.0 15.365854 70 GATCTTA 160 5.157331E-4 15.3125 1 ATCGTTG 140 0.0037513094 15.0 40 >>END_MODULE