##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781125_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 156381 Sequences flagged as poor quality 0 Sequence length 76 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.32525690461117 34.0 34.0 34.0 33.0 34.0 2 33.315153375410056 34.0 34.0 34.0 33.0 34.0 3 33.35250446026052 34.0 34.0 34.0 33.0 34.0 4 33.4156323338513 34.0 34.0 34.0 34.0 34.0 5 33.40350809880996 34.0 34.0 34.0 34.0 34.0 6 36.84356155798978 38.0 37.0 38.0 34.0 38.0 7 36.7585832038419 38.0 37.0 38.0 34.0 38.0 8 36.5390168882409 38.0 37.0 38.0 34.0 38.0 9 36.494753198918026 38.0 37.0 38.0 34.0 38.0 10-11 36.40922810315831 38.0 37.0 38.0 34.0 38.0 12-13 36.344671027810286 38.0 37.0 38.0 34.0 38.0 14-15 36.36343289785844 38.0 37.0 38.0 34.0 38.0 16-17 36.30537277546505 38.0 37.0 38.0 34.0 38.0 18-19 36.322849323127485 38.0 37.0 38.0 34.0 38.0 20-21 36.253710489125915 38.0 37.0 38.0 34.0 38.0 22-23 36.2981404390559 38.0 37.0 38.0 34.0 38.0 24-25 36.28134172309935 38.0 37.0 38.0 34.0 38.0 26-27 36.0860078909842 38.0 37.0 38.0 33.0 38.0 28-29 36.063904822197074 38.0 37.0 38.0 32.0 38.0 30-31 36.12389292816902 38.0 37.0 38.0 33.5 38.0 32-33 36.03412818692808 38.0 37.0 38.0 32.0 38.0 34-35 36.0406379291602 38.0 37.0 38.0 32.0 38.0 36-37 35.99565804029901 38.0 37.0 38.0 32.0 38.0 38-39 35.90456641152058 38.0 37.0 38.0 32.0 38.0 40-41 35.97372762675773 38.0 37.0 38.0 32.0 38.0 42-43 36.010356117431144 38.0 37.0 38.0 32.0 38.0 44-45 35.97270768187951 38.0 37.0 38.0 32.0 38.0 46-47 35.99071178723758 38.0 37.0 38.0 32.0 38.0 48-49 35.96129005441837 38.0 37.0 38.0 32.0 38.0 50-51 35.867659754062196 38.0 36.5 38.0 31.5 38.0 52-53 35.88029875752169 38.0 37.0 38.0 31.5 38.0 54-55 35.906986782281734 38.0 37.0 38.0 32.0 38.0 56-57 35.866783688555515 38.0 37.0 38.0 32.0 38.0 58-59 35.83419021492381 38.0 36.5 38.0 31.0 38.0 60-61 35.83541798556091 38.0 36.5 38.0 31.5 38.0 62-63 35.79903249115941 38.0 36.0 38.0 31.0 38.0 64-65 35.756974952200075 38.0 36.0 38.0 31.0 38.0 66-67 35.70934128826392 38.0 36.0 38.0 31.0 38.0 68-69 35.61378300432917 38.0 36.0 38.0 31.0 38.0 70-71 35.438764939474744 38.0 36.0 38.0 30.0 38.0 72-73 35.30817362723093 38.0 36.0 38.0 29.0 38.0 74-75 35.300404141168045 38.0 36.0 38.0 28.5 38.0 76 34.395776980579484 37.0 34.0 38.0 25.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 1.0 21 8.0 22 22.0 23 41.0 24 126.0 25 236.0 26 494.0 27 805.0 28 1330.0 29 2004.0 30 3182.0 31 4781.0 32 6661.0 33 9143.0 34 12831.0 35 17798.0 36 26758.0 37 70160.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.32623528433761 18.28227214303528 10.465465753512255 27.926026819114853 2 23.3436287016965 19.475511730964758 31.979588313158246 25.201271254180497 3 20.164853786585326 21.483428293718546 28.960679366419196 29.391038553276932 4 14.718539976084053 17.909464704791503 34.864209846464725 32.50778547265972 5 14.579136851663566 33.23613482456309 35.75626194998114 16.428466373792215 6 31.212871128845578 37.2941725657209 16.730932785952255 14.762023519481268 7 30.044570631982147 27.56409026672038 20.77426285801984 21.617076243277637 8 26.411776366694163 35.03622562843312 18.041194262730126 20.51080374214259 9 24.63214840677576 15.95846042677819 20.09834954374253 39.31104162270353 10-11 25.671596933131262 24.94580543672185 26.462294012699754 22.920303617447132 12-13 25.59262314475544 22.056707656300958 26.31521732179741 26.035451877146198 14-15 23.52875349307141 23.14379624123135 22.461808020155903 30.865642245541338 16-17 25.207346160978634 26.86611544880772 23.910513425544025 24.016024964669622 18-19 24.79009598352741 25.60797027771916 24.88153931743626 24.720394421317167 20-21 23.408854016792322 25.340994110537725 24.71304058677205 26.5371112858979 22-23 23.823546338749594 26.454940178154633 24.90775733624929 24.813756146846483 24-25 24.706326216100422 26.66660272027932 24.808640435858575 23.818430627761686 26-27 24.029773437949622 27.03301551978821 25.277687187062366 23.6595238551998 28-29 23.56967918097467 26.314258125987173 25.769434905774997 24.34662778726316 30-31 23.608366745320723 26.52560093617511 25.12709344485583 24.738938873648333 32-33 24.45181959445201 25.796931852335003 24.79137491127439 24.9598736419386 34-35 23.828022585864012 25.970226562050374 25.16162449402421 25.0401263580614 36-37 23.696932491798876 26.362857380372297 26.25063147057507 23.689578657253758 38-39 23.037325506295524 25.510452037012172 26.95532065915936 24.49690179753295 40-41 23.147952756409026 24.374764197696653 27.417972771628268 25.059310274266057 42-43 24.429438358879914 24.44862227508457 27.044525869511006 24.077413496524514 44-45 22.39146699407217 25.730107877555458 27.753371573272968 24.125053555099406 46-47 23.979895255817524 24.128890338340337 26.479879269220685 25.411335136621453 48-49 23.19047710399601 24.21074171414686 26.908959528331444 25.689821653525684 50-51 21.96558405432885 24.27724595698966 28.11083187855302 25.646338110128468 52-53 21.672070136397643 24.140400688063128 29.686470862828607 24.501058312710626 54-55 20.86890351129613 24.30058638837199 28.768200740499168 26.062309359832714 56-57 22.092837365153056 24.266375071140356 27.349869869101745 26.290917694604843 58-59 20.963544164572422 24.4163293494734 29.09464704791503 25.52547943803915 60-61 21.918583459627445 25.40941674500099 27.032695787851463 25.639304007520096 62-63 19.924415370153664 27.03941015852309 26.68834449197793 26.347829979345317 64-65 20.61311796190074 27.510055569410607 25.662644438902426 26.214182029786226 66-67 20.678023545059823 27.142044110217995 25.187203048963745 26.992729295758437 68-69 20.368203298354658 27.654894136755743 24.90807706818603 27.068825496703564 70-71 20.767548487348208 27.10431574168217 24.80672204423811 27.321413726731507 72-73 21.06138213721616 25.870150465849434 24.78242241704555 28.286044979888864 74-75 21.175846170570594 26.067105338883877 24.366131435404554 28.390917055140967 76 21.274323607087815 26.295393941719265 24.128250874466847 28.302031576726073 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.5 14 5.0 15 10.5 16 13.0 17 14.0 18 24.0 19 40.0 20 69.0 21 92.0 22 100.0 23 155.5 24 263.0 25 323.0 26 384.5 27 496.0 28 732.0 29 918.0 30 1041.0 31 1304.0 32 1882.0 33 2320.0 34 2546.0 35 3148.0 36 4005.0 37 4486.0 38 4969.5 39 6164.5 40 7623.5 41 8871.0 42 9371.0 43 9796.5 44 10134.0 45 10074.0 46 10102.0 47 9794.0 48 8877.0 49 8009.0 50 7750.0 51 7064.5 52 5814.5 53 4942.5 54 4635.0 55 4235.5 56 3514.0 57 2847.5 58 2503.0 59 2362.5 60 2141.0 61 1942.5 62 1825.0 63 1789.5 64 1759.5 65 1747.5 66 1732.5 67 1735.0 68 1728.5 69 1647.5 70 1526.5 71 1480.0 72 1452.5 73 1393.0 74 1269.0 75 1177.0 76 1091.5 77 944.5 78 783.5 79 684.0 80 610.5 81 461.5 82 338.0 83 290.0 84 245.5 85 181.0 86 121.0 87 81.0 88 73.0 89 47.5 90 23.5 91 10.0 92 3.0 93 4.0 94 2.5 95 0.0 96 0.0 97 0.5 98 0.5 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 156381.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.62218555962681 #Duplication Level Percentage of deduplicated Percentage of total 1 60.40838371866233 25.747373402139644 2 19.55050785411009 16.665707470856432 3 7.722083027020539 9.873961670535424 4 3.5512280017403564 6.054443954188808 5 1.9128921428892924 4.076582193488979 6 1.3067678874169204 3.3418382028507296 7 0.9121869983346585 2.721558245566917 8 0.7261488605164058 2.4760041181473453 9 0.5866202571527164 2.2502733708059166 >10 3.2751714101390785 23.210620216010895 >50 0.04200861176541191 1.10563303726156 >100 0.004500922689151276 0.40350170417122283 >500 0.0 0.0 >1k 0.0015003075630504253 2.0725024139761223 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCGT 3241 2.0725024139761223 No Hit TCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCCG 286 0.18288666781770163 No Hit CTCTTATACACATCTCCGAGCCCACGAGACAACGCCATATCTCGTATGCC 191 0.12213759983629724 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.001918391620465402 0.0 2 0.0 0.0 0.0 0.001918391620465402 0.0 3 0.0 0.0 0.0 0.001918391620465402 0.0 4 0.0 0.0 0.0 0.004476247114419271 0.0 5 0.0 0.0 0.0 0.005115710987907738 0.0 6 0.0 0.0 0.0 0.005115710987907738 0.0 7 0.0 0.0 0.0 0.005115710987907738 0.0 8 0.0 0.0 0.0 0.005115710987907738 0.0 9 0.0 0.0 0.0 0.0063946387348846724 0.0 10 0.0 0.0 0.0 0.00703410260837314 0.0 11 0.0 0.0 0.0 0.00703410260837314 0.0 12 0.0 0.0 0.0 0.00703410260837314 0.0 13 0.0 0.0 0.0 0.00703410260837314 0.0 14 0.0 0.0 0.0 0.00703410260837314 0.0 15 0.0 0.0 0.0 0.00703410260837314 0.0 16 0.0 0.0 0.0 0.00703410260837314 0.0 17 0.0 0.0 0.0 0.009591958102327009 0.0 18 0.0 0.0 0.0 0.009591958102327009 0.0 19 0.0 0.0 0.0 0.01151034972279241 0.0 20 0.0 0.0 0.0 0.012149813596280878 0.0 21 0.0 0.0 0.0 0.012149813596280878 0.0 22 0.0 0.0 0.0 0.012149813596280878 0.0 23 0.0 0.0 0.0 0.012149813596280878 0.0 24 0.0 0.0 0.0 0.012789277469769345 0.0 25 0.0 0.0 0.0 0.01406820521674628 0.0 26 0.0 0.0 0.0 0.014707669090234746 0.0 27 0.0 0.0 0.0 0.02557855493953869 0.0 28 0.0 0.0 0.0 0.041565151776750374 0.0 29 0.0 0.0012789277469769345 0.0 0.06394638734884672 0.0 30 0.0 0.0012789277469769345 0.0 0.09400118940280469 0.0 31 0.0 0.0012789277469769345 0.0 0.11766135272187797 0.0 32 0.0 0.0012789277469769345 0.0 0.1445188354083936 0.0 33 0.0 0.0012789277469769345 0.0 0.18800237880560938 0.0 34 0.0 0.0012789277469769345 0.0 0.27688785722050635 0.0 35 0.0 0.0012789277469769345 0.0 0.3907124267014535 0.0 36 0.0 0.0012789277469769345 0.0 0.5684833835312474 0.0 37 0.0 0.0012789277469769345 0.0 0.8658340847033846 0.0 38 0.0 0.0012789277469769345 0.0 1.1926001240559914 0.0 39 0.0 0.0012789277469769345 0.0 1.591625581112795 0.0 40 0.0 0.0012789277469769345 0.0 2.0315767260728603 0.0 41 0.0 0.0012789277469769345 0.0 2.524603372532469 0.0 42 0.0 0.0012789277469769345 0.0 3.0732633759855736 0.0 43 0.0 0.0012789277469769345 0.0 3.7351084850461373 0.0 44 0.0 0.0012789277469769345 0.0 4.474968186672294 0.0 45 0.0 0.0012789277469769345 0.0 5.287087306002648 0.0 46 0.0 0.0012789277469769345 0.0 6.133737474501378 0.0 47 0.0 0.0012789277469769345 0.0 6.922196430512658 0.0 48 0.0 0.0012789277469769345 0.0 7.638395968819742 0.0 49 0.0 0.0012789277469769345 0.0 8.417902430602183 0.0 50 0.0 0.0012789277469769345 0.0 9.098931455867401 0.0 51 0.0 0.0012789277469769345 0.0 9.81321260255402 0.0 52 0.0 0.0012789277469769345 0.0 10.553072304180175 0.0 53 0.0 0.0012789277469769345 0.0 11.28525843932447 0.0 54 0.0 0.0012789277469769345 0.0 12.120398258100408 0.0 55 0.0 0.0012789277469769345 0.0 12.966408962725652 0.0 56 0.0 0.0012789277469769345 0.0 13.736323466405766 0.0 57 0.0 0.0012789277469769345 0.0 14.517108855935184 0.0 58 0.0 0.0012789277469769345 0.0 15.237145177483198 0.0 59 0.0 0.0012789277469769345 0.0 15.929684552471208 0.0 60 0.0 0.0012789277469769345 0.0 16.57234574532712 0.0 61 0.0 0.0012789277469769345 0.0 17.261048337074197 0.0 62 0.0 0.0012789277469769345 0.0 17.908825240918013 0.0 63 0.0 0.0012789277469769345 0.0 18.570670349978577 0.0 64 0.0 0.0012789277469769345 0.0 19.294543454767524 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCTTC 475 0.0 56.73684 48 CCGTCTT 475 0.0 56.73684 47 TATGCCG 495 0.0 56.56566 43 CGTATGC 505 0.0 56.138615 41 TCGTATG 500 0.0 56.0 40 CTCGTAT 495 0.0 55.85859 39 ATGCCGT 495 0.0 55.85859 44 TGCCGTC 505 0.0 55.445545 45 GCCGTCT 500 0.0 55.3 46 CTTGAAA 485 0.0 54.84536 57 TCTCGTA 450 0.0 54.444447 38 ATCTCGT 455 0.0 53.846157 37 CTGCTTG 505 0.0 53.366337 54 GTCTTCT 505 0.0 53.366337 49 GTATGCC 525 0.0 53.333332 42 TCTTCTG 520 0.0 53.173077 50 GCTAGTT 20 0.0069408645 52.5 58 TATACAG 20 0.0069408645 52.5 5 ATCGCCT 20 0.0069408645 52.5 35 GGCTAGT 20 0.0069408645 52.5 57 >>END_MODULE