##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781124_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 256409 Sequences flagged as poor quality 0 Sequence length 76 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.582105152315247 34.0 30.0 34.0 12.0 34.0 2 29.578774535995226 34.0 27.0 34.0 12.0 34.0 3 29.417079743690746 34.0 27.0 34.0 11.0 34.0 4 29.704788053461463 34.0 31.0 34.0 11.0 34.0 5 29.761677632220398 34.0 31.0 34.0 11.0 34.0 6 31.859930813660988 36.0 31.0 38.0 11.0 38.0 7 31.793162486496183 36.0 27.0 38.0 12.0 38.0 8 31.43019160793888 36.0 27.0 38.0 11.0 38.0 9 32.10803052934959 37.0 31.0 38.0 12.0 38.0 10-11 31.837868405555188 36.5 30.0 38.0 11.0 38.0 12-13 31.80492299412267 36.0 31.0 38.0 11.0 38.0 14-15 31.68929327753706 36.0 27.5 38.0 11.0 38.0 16-17 31.644907160045086 36.0 27.5 38.0 11.0 38.0 18-19 31.703998299591667 36.0 28.5 38.0 11.0 38.0 20-21 31.62613051803954 36.0 27.5 38.0 11.0 38.0 22-23 31.733002741713435 36.0 29.0 38.0 11.0 38.0 24-25 31.727400364261783 36.0 28.5 38.0 11.0 38.0 26-27 31.63875877991802 36.0 27.0 38.0 11.0 38.0 28-29 31.74963047318932 36.0 28.5 38.0 11.0 38.0 30-31 31.811397025845427 36.0 30.0 38.0 11.0 38.0 32-33 31.782575884621835 36.0 29.0 38.0 11.0 38.0 34-35 31.796430702510442 36.0 30.0 38.0 11.0 38.0 36-37 31.612597451727513 36.0 27.0 38.0 11.0 38.0 38-39 31.62816437800545 36.0 27.0 38.0 11.0 38.0 40-41 31.619266484405774 36.0 27.0 38.0 11.0 38.0 42-43 31.717570366094794 36.0 28.0 38.0 11.0 38.0 44-45 31.725920307009503 36.0 28.5 38.0 11.0 38.0 46-47 31.683421798766815 36.0 28.0 38.0 11.0 38.0 48-49 31.648313826737752 36.0 27.0 38.0 11.0 38.0 50-51 31.477251188530822 36.0 27.0 38.0 11.0 38.0 52-53 31.580740145626713 36.0 27.0 38.0 11.0 38.0 54-55 31.51390746814659 36.0 27.0 38.0 11.0 38.0 56-57 31.4908603052155 36.0 27.0 38.0 11.0 38.0 58-59 31.50561017748987 36.0 27.0 38.0 11.0 38.0 60-61 31.446201186385814 36.0 27.0 38.0 11.0 38.0 62-63 31.42774629595685 36.0 27.0 38.0 11.0 38.0 64-65 31.45600193440948 36.0 27.0 38.0 11.0 38.0 66-67 31.320441170161736 36.0 27.0 38.0 11.0 38.0 68-69 31.053516062228706 36.0 27.0 38.0 11.0 38.0 70-71 31.218449820404118 36.0 27.0 38.0 11.0 38.0 72-73 31.168196124161007 36.0 27.0 38.0 11.0 38.0 74-75 31.147980375103838 36.0 27.0 38.0 11.0 38.0 76 29.648358676957518 34.0 24.0 37.0 11.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 4.0 13 20.0 14 76.0 15 301.0 16 766.0 17 1688.0 18 2836.0 19 3944.0 20 4915.0 21 5569.0 22 6305.0 23 6909.0 24 7631.0 25 8166.0 26 8785.0 27 9702.0 28 10503.0 29 11344.0 30 12247.0 31 13245.0 32 14309.0 33 16176.0 34 18574.0 35 22053.0 36 29417.0 37 40924.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.73272389034706 17.669036578279236 9.337425753386192 25.26081377798751 2 24.53346021395505 20.691941390512813 30.147537722934842 24.627060672597295 3 20.009438046246427 21.266414205429605 29.355443841674823 29.36870390664914 4 14.157459371550921 17.302044780019422 36.035396573443215 32.50509927498645 5 13.784227542714959 32.90992125861417 36.392248322016776 16.913602876654096 6 28.79267108408831 36.55292910935263 19.61982613714807 15.03457366941098 7 28.558279935571683 29.183452998919694 22.76714155899364 19.49112550651498 8 25.633265603001455 33.68329504814574 20.047268231614336 20.636171117238476 9 24.607170575135818 16.75838211607237 21.556185625309567 37.07826168348225 10-11 24.81504159370381 24.50401506967384 27.883576629525486 22.797366707096863 12-13 25.095062965808534 22.77104157810373 27.110007839038413 25.023887617049322 14-15 23.273754041394803 23.925642235646954 24.447269791621977 28.353333931336262 16-17 23.55475041827705 26.899016805182345 25.13152814448791 24.414704632052697 18-19 22.693626198768374 26.659945633733606 26.720395929940054 23.926032237557965 20-21 23.02668783077037 26.632840500918455 26.688220772281785 23.65225089602939 22-23 23.215838757609912 26.245178601375148 26.814581391448815 23.724401249566125 24-25 22.888237152362045 26.42730949381652 26.694850804768944 23.989602549052492 26-27 22.390009711047583 26.47274471644911 27.121122893502182 24.01612267900113 28-29 22.852746978460196 26.284373793431588 27.696180711285486 23.16669851682273 30-31 22.818816812202382 26.538460038454186 27.112737852415474 23.529985296927954 32-33 22.52651037990086 26.731900986314834 27.032397458747546 23.709191175036757 34-35 23.489230097227477 26.01117745476953 27.055602572452603 23.44398987555039 36-37 23.342199376776946 26.08001279206268 26.77090117741577 23.806886653744602 38-39 22.646825969447253 26.58389526108678 27.28999372096923 23.479285048496738 40-41 22.758561516951435 25.90080691395388 27.58503016664782 23.75560140244687 42-43 22.563560561446753 26.065972723266345 27.311638827030254 24.058827888256655 44-45 22.162638596929124 25.844061635902015 27.56299505867579 24.430304708493072 46-47 22.495505227975617 25.222983592619602 27.841846425047486 24.439664754357295 48-49 21.69054128365229 25.442944670428886 28.46994450272806 24.39656954319076 50-51 21.963542621358844 25.514315020143595 28.176273063738012 24.345869294759545 52-53 21.464925178133374 25.278948866849447 28.720910732462592 24.53521522255459 54-55 21.05464316775152 25.845231641635042 28.60605516967033 24.494070020943106 56-57 20.91607906149574 25.684456023213002 28.427350160681414 24.97211475460984 58-59 20.991154722161557 25.46761411500421 28.4542603974915 25.086970765342738 60-61 20.905508202731188 25.47945953429781 28.47663006491594 25.138402198055054 62-63 20.622211475460983 25.322142834856948 28.727457801628653 25.328187888053417 64-65 21.126639717482064 25.52976987892367 28.06985727852236 25.273733125071907 66-67 21.038150135721196 25.334037939533864 27.751084209541045 25.876727715203895 68-69 20.86674362734392 25.448503946834734 27.40495616361424 26.279796262207107 70-71 21.40046332407725 25.20338678980375 27.475156781379678 25.92099310473932 72-73 21.24017191351284 24.920049296433806 27.247004773642008 26.592774016411347 74-75 21.522144394870672 24.70262238307697 27.212294468191324 26.562938753861033 76 21.74338654259406 24.295949050150345 26.845781544329565 27.114882862926027 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 1.0 10 1.0 11 3.0 12 5.0 13 5.0 14 11.5 15 29.0 16 60.0 17 80.0 18 99.5 19 151.0 20 240.0 21 297.0 22 355.0 23 504.5 24 735.0 25 874.0 26 1093.5 27 1496.0 28 1894.5 29 2110.0 30 2410.0 31 3105.5 32 4036.0 33 4571.0 34 4953.5 35 6129.0 36 7506.0 37 8090.0 38 9096.0 39 10867.0 40 12474.0 41 14034.0 42 14752.0 43 15043.0 44 15490.0 45 15625.5 46 15605.0 47 15287.0 48 14404.5 49 13310.5 50 12781.0 51 11947.5 52 10242.0 53 8713.5 54 8057.0 55 7482.0 56 6489.0 57 5461.5 58 4852.0 59 4452.5 60 3737.0 61 3211.5 62 3002.0 63 2826.0 64 2504.0 65 2273.5 66 2081.0 67 1973.0 68 1914.5 69 1787.5 70 1635.5 71 1552.0 72 1488.0 73 1378.5 74 1281.0 75 1229.0 76 1124.5 77 935.5 78 787.0 79 723.0 80 633.5 81 477.0 82 348.0 83 286.0 84 252.0 85 177.5 86 121.0 87 105.0 88 81.5 89 48.5 90 25.5 91 13.5 92 15.0 93 11.5 94 6.5 95 3.5 96 2.0 97 1.5 98 0.5 99 1.5 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 3.9000191100936393E-4 58-59 3.9000191100936393E-4 60-61 1.9500095550468196E-4 62-63 3.9000191100936393E-4 64-65 1.9500095550468196E-4 66-67 3.9000191100936393E-4 68-69 3.9000191100936393E-4 70-71 3.9000191100936393E-4 72-73 3.9000191100936393E-4 74-75 3.9000191100936393E-4 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 256409.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 66.39781311886638 #Duplication Level Percentage of deduplicated Percentage of total 1 83.17999968144312 55.22970074075825 2 9.03905018196205 12.003463295079426 3 3.05273096769414 6.0808398088539475 4 1.3416193472553846 3.5632236278287404 5 0.7442109032229949 2.470698823661158 6 0.4880416115787403 1.9442937431901341 7 0.37537037212749313 1.7446640273216432 8 0.28471845266669993 1.5123746089325076 9 0.2580262173022214 1.5419138900580815 >10 1.2233747813003952 13.383020433832387 >50 0.012857483446704863 0.5258070004837379 >100 0.0 0.0 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0011700057330280918 0.0 2 0.0 0.0 0.0 0.0011700057330280918 0.0 3 0.0 0.0 0.0 0.0011700057330280918 0.0 4 0.0 0.0 0.0 0.0023400114660561836 0.0 5 0.0 0.0 0.0 0.0023400114660561836 0.0 6 0.0 0.0 0.0 0.0023400114660561836 0.0 7 0.0 0.0 0.0 0.0023400114660561836 0.0 8 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 0.0 9 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 0.0 10 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 0.0 11 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 0.0 12 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 0.0 13 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 3.9000191100936393E-4 14 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 3.9000191100936393E-4 15 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 3.9000191100936393E-4 16 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 3.9000191100936393E-4 17 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 3.9000191100936393E-4 18 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 3.9000191100936393E-4 19 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 3.9000191100936393E-4 20 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 3.9000191100936393E-4 21 0.0 3.9000191100936393E-4 0.0 0.0023400114660561836 3.9000191100936393E-4 22 0.0 3.9000191100936393E-4 0.0 0.0031200152880749114 3.9000191100936393E-4 23 0.0 3.9000191100936393E-4 0.0 0.0031200152880749114 3.9000191100936393E-4 24 0.0 3.9000191100936393E-4 0.0 0.0035100171990842754 3.9000191100936393E-4 25 0.0 3.9000191100936393E-4 0.0 0.004290021021103004 3.9000191100936393E-4 26 0.0 3.9000191100936393E-4 0.0 0.0050700248431217315 3.9000191100936393E-4 27 0.0 3.9000191100936393E-4 0.0 0.010140049686243463 3.9000191100936393E-4 28 0.0 3.9000191100936393E-4 0.0 0.01677008217340265 3.9000191100936393E-4 29 0.0 3.9000191100936393E-4 0.0 0.02301011274955247 3.9000191100936393E-4 30 0.0 3.9000191100936393E-4 0.0 0.03159015479175848 3.9000191100936393E-4 31 0.0 3.9000191100936393E-4 0.0 0.04056019874497385 3.9000191100936393E-4 32 0.0 3.9000191100936393E-4 0.0 0.051870254164245407 3.9000191100936393E-4 33 0.0 3.9000191100936393E-4 0.0 0.0756603707358166 3.9000191100936393E-4 34 0.0 3.9000191100936393E-4 0.0 0.10530051597252826 3.9000191100936393E-4 35 0.0 3.9000191100936393E-4 0.0 0.15366075293768938 3.9000191100936393E-4 36 0.0 3.9000191100936393E-4 0.0 0.23322114278359965 3.9000191100936393E-4 37 0.0 3.9000191100936393E-4 0.0 0.37128181928091447 3.9000191100936393E-4 38 0.0 3.9000191100936393E-4 0.0 0.5495126926121938 3.9000191100936393E-4 39 0.0 3.9000191100936393E-4 0.0 0.7605037264682597 3.9000191100936393E-4 40 0.0 3.9000191100936393E-4 0.0 1.0089349437812245 3.9000191100936393E-4 41 0.0 3.9000191100936393E-4 0.0 1.2920763311740227 3.9000191100936393E-4 42 0.0 3.9000191100936393E-4 0.0 1.616947923044823 3.9000191100936393E-4 43 0.0 3.9000191100936393E-4 0.0 2.0022698111220745 3.9000191100936393E-4 44 0.0 3.9000191100936393E-4 0.0 2.482752165485611 3.9000191100936393E-4 45 0.0 3.9000191100936393E-4 0.0 3.0205648007675236 3.9000191100936393E-4 46 0.0 3.9000191100936393E-4 0.0 3.5782675335109144 3.9000191100936393E-4 47 0.0 3.9000191100936393E-4 0.0 4.176140463088269 3.9000191100936393E-4 48 0.0 3.9000191100936393E-4 0.0 4.729943176721566 3.9000191100936393E-4 49 0.0 3.9000191100936393E-4 0.0 5.3223560795447895 3.9000191100936393E-4 50 0.0 3.9000191100936393E-4 0.0 5.847688653674403 3.9000191100936393E-4 51 0.0 3.9000191100936393E-4 0.0 6.35235112652052 3.9000191100936393E-4 52 0.0 3.9000191100936393E-4 0.0 6.876513694917105 3.9000191100936393E-4 53 0.0 3.9000191100936393E-4 0.0 7.381956171585241 3.9000191100936393E-4 54 0.0 3.9000191100936393E-4 0.0 7.943558923438725 3.9000191100936393E-4 55 0.0 3.9000191100936393E-4 0.0 8.55391191416838 3.9000191100936393E-4 56 0.0 3.9000191100936393E-4 0.0 9.188445023380615 3.9000191100936393E-4 57 0.0 3.9000191100936393E-4 0.0 9.780467924292829 3.9000191100936393E-4 58 0.0 3.9000191100936393E-4 0.0 10.410711012483961 3.9000191100936393E-4 59 0.0 3.9000191100936393E-4 0.0 10.990253852243876 3.9000191100936393E-4 60 0.0 3.9000191100936393E-4 0.0 11.550296596453322 3.9000191100936393E-4 61 0.0 3.9000191100936393E-4 0.0 12.088889235557254 3.9000191100936393E-4 62 0.0 3.9000191100936393E-4 0.0 12.628651880394214 3.9000191100936393E-4 63 0.0 3.9000191100936393E-4 0.0 13.130974341774275 3.9000191100936393E-4 64 0.0 3.9000191100936393E-4 0.0 13.62393675729011 3.9000191100936393E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTACCG 20 0.006945909 52.5 9 GTACTAG 35 0.001253945 40.0 1 ATCGCGG 35 0.001253945 40.0 30 AATATGG 60 1.2128701E-5 35.000004 52 CCGAAGC 65 2.0976895E-5 32.307693 68 TCCGAAG 55 2.9870178E-4 31.818184 67 GTATAAC 55 2.9870178E-4 31.818184 3 TTCCGAA 45 0.0043022814 31.111109 66 TTTGCAC 45 0.0043022814 31.111109 45 GACCATA 60 4.9736263E-4 29.166668 1 CGAGCTT 60 4.9736263E-4 29.166668 26 CGACGAA 75 5.5713987E-5 28.0 70 GTATCCA 75 5.5713987E-5 28.0 13 TATTCCG 50 0.0072000893 27.999998 64 GACGATT 50 0.0072000893 27.999998 67 TATCGGT 50 0.0072000893 27.999998 24 TAGCCCG 65 7.942389E-4 26.923079 5 CCAGAAC 95 9.360732E-6 25.789473 51 ATTTAGA 70 0.0012239565 25.0 2 CGTGGTT 70 0.0012239565 25.0 64 >>END_MODULE