##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781123_2.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 355883 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.431894751926897 34.0 33.0 34.0 23.0 34.0 2 31.53454927602611 34.0 33.0 34.0 24.0 34.0 3 31.511092128592825 34.0 33.0 34.0 23.0 34.0 4 31.664277304619777 34.0 34.0 34.0 23.0 34.0 5 31.63391339288474 34.0 34.0 34.0 23.0 34.0 6 34.41244453935703 37.0 34.0 38.0 26.0 38.0 7 34.34318863221902 37.0 34.0 38.0 24.0 38.0 8 34.29214938617467 37.0 34.0 38.0 24.0 38.0 9 34.53134597606517 37.0 34.0 38.0 26.0 38.0 10-11 34.429306822747925 38.0 34.0 38.0 25.5 38.0 12-13 34.38041575461598 38.0 34.0 38.0 25.0 38.0 14-15 34.27620032426387 37.0 34.0 38.0 24.0 38.0 16-17 34.23905187940981 37.0 34.0 38.0 24.5 38.0 18-19 34.28286543611243 37.0 34.0 38.0 24.5 38.0 20-21 34.2229932309214 37.0 34.0 38.0 24.5 38.0 22-23 34.2760022254505 37.0 34.0 38.0 24.5 38.0 24-25 34.26111531036886 37.0 34.0 38.0 24.0 38.0 26-27 34.18016314350503 37.0 34.0 38.0 24.0 38.0 28-29 34.26950289842448 37.0 34.0 38.0 24.0 38.0 30-31 34.34555036346215 37.0 34.0 38.0 25.0 38.0 32-33 34.30016466085765 37.0 34.0 38.0 24.5 38.0 34-35 34.32731122307051 37.0 34.0 38.0 24.5 38.0 36-37 34.17705819047271 37.0 34.0 38.0 24.0 38.0 38-39 34.201165832591045 37.0 34.0 38.0 24.0 38.0 40-41 34.18119438129947 37.0 34.0 38.0 24.0 38.0 42-43 34.26767926537654 37.0 34.0 38.0 24.0 38.0 44-45 34.282747419798085 37.0 34.0 38.0 24.5 38.0 46-47 34.28384328557419 37.0 34.0 38.0 24.5 38.0 48-49 34.23946072164166 37.0 34.0 38.0 24.0 38.0 50-51 34.11810904145464 37.0 34.0 38.0 24.0 38.0 52-53 34.19802575565565 37.0 34.0 38.0 24.0 38.0 54-55 34.15943161095079 37.0 34.0 38.0 24.0 38.0 56-57 34.12178300171686 37.0 34.0 38.0 24.0 38.0 58-59 34.118295900619025 37.0 34.0 38.0 24.0 38.0 60-61 34.10371105110387 37.0 34.0 38.0 24.0 38.0 62-63 34.07720936375157 37.0 34.0 38.0 24.0 38.0 64-65 34.10140551810567 37.0 34.0 38.0 24.0 38.0 66-67 33.994132903229435 37.0 34.0 38.0 24.0 38.0 68-69 33.771905373395185 37.0 34.0 38.0 23.5 38.0 70-71 33.922856669186224 37.0 34.0 38.0 23.5 38.0 72-73 33.88525020863598 37.0 34.0 38.0 23.0 38.0 74-75 33.86049488174484 37.0 34.0 38.0 23.5 38.0 76 32.52497871491473 37.0 31.0 38.0 21.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 6.0 13 26.0 14 112.0 15 326.0 16 664.0 17 1174.0 18 1666.0 19 2022.0 20 2247.0 21 2716.0 22 3024.0 23 3484.0 24 4355.0 25 5111.0 26 6048.0 27 7202.0 28 8284.0 29 10223.0 30 11985.0 31 14218.0 32 17249.0 33 21277.0 34 27058.0 35 35505.0 36 53710.0 37 116191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.831683446525965 18.529966309152165 9.659354338364013 24.978995905957856 2 23.429048310821255 20.877647991053237 31.10516658564753 24.588137112477977 3 19.438691929651036 22.03392688046352 29.994970257078872 28.532410932806567 4 14.086090091406444 16.69087874385683 36.77107363937024 32.45195752536648 5 13.84443763821256 33.17494794637563 36.236909321321896 16.74370509408991 6 29.92275551234535 36.63788379888896 18.97308947041584 14.466271218349853 7 29.081186794536407 29.715102997333393 22.12047217765389 19.083238030476306 8 25.935209043421576 34.42732583461419 20.19512030639283 19.44234481557141 9 24.68957494457448 17.32844783257419 21.75293565581947 36.229041567031864 10-11 25.351730765448195 24.731442637046445 27.385826240646505 22.531000356858854 12-13 25.363813388107893 23.148478573014163 27.058330968323858 24.429377070554086 14-15 23.189924778649164 24.069146320560407 24.414063048810984 28.326865851979445 16-17 23.24724698847655 27.527305322254787 25.42141658915992 23.804031100108745 18-19 22.917784777581396 27.025454995040505 26.779728169089278 23.277032058288817 20-21 23.06151178898683 26.791810791748972 26.65370360483642 23.492973814427774 22-23 23.208189208251024 26.35318349007961 27.012248407482236 23.426378894187135 24-25 23.05476799959537 26.673372990561507 26.757389366730077 23.514469643113046 26-27 22.44979389293672 26.855455304130853 27.073363998842314 23.621386804090108 28-29 22.883222856950177 26.696273775369995 27.618767965876422 22.801735401803402 30-31 23.082867122059778 26.643728416361554 27.040066538721995 23.23333792285667 32-33 22.52355408940579 27.110033353658363 26.91713287794022 23.449279678995623 34-35 23.195123116305076 26.240084522160373 27.30180986447793 23.262982497056615 36-37 23.175734721804638 26.566736820809083 26.842810699021868 23.414717758364407 38-39 22.619934079458698 26.90940561926251 27.431065827814198 23.039594473464593 40-41 22.83714029610855 26.183745781619237 27.74310658278142 23.23600733949079 42-43 22.55151271625787 26.27029107880961 27.410131981578218 23.768064223354305 44-45 22.27122396967543 26.240927495834303 27.595726685455613 23.892121849034655 46-47 22.286397495806206 25.858357943481426 27.988973904344967 23.8662706563674 48-49 21.771481076645976 25.96190320976276 28.59647693202541 23.670138781565853 50-51 21.842712352093244 25.84430838224922 28.327849321265695 23.985129944391836 52-53 21.581109521949628 25.75818457189582 28.843327722875216 23.817378183279338 54-55 21.172688776929498 26.263125802581182 28.617410778261394 23.946774642227922 56-57 20.924995012405763 26.089332730138835 28.62879092285948 24.35688133459592 58-59 21.048771646861468 26.006861805705807 28.512741547081482 24.43162500035124 60-61 20.916143788829476 25.93211813995049 28.5013614024834 24.650376668736634 62-63 20.63922693694276 25.77181264629106 28.685270159012934 24.90369025775325 64-65 21.15821772886033 25.92115948218937 28.14857691994279 24.77204586900751 66-67 21.119440939859448 25.730647431880705 27.967056588822732 25.18285503943712 68-69 21.117895488123906 25.592118758131182 27.690701719385302 25.59928403435961 70-71 21.467308075968788 25.584672490678116 27.689577754486727 25.258441678866365 72-73 21.49231629496211 25.134524548798343 27.399735306266386 25.973423849973166 74-75 21.707555573039453 25.300590362562975 27.284809895386967 25.7070441690106 76 21.731018340297233 25.02002062475589 27.195173694725515 26.053787340221362 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.5 3 0.5 4 0.0 5 0.0 6 0.5 7 0.5 8 0.0 9 0.0 10 3.0 11 3.5 12 1.0 13 5.0 14 14.5 15 40.0 16 88.5 17 117.0 18 152.5 19 218.0 20 345.5 21 443.0 22 551.5 23 797.5 24 1197.0 25 1459.0 26 1740.5 27 2314.5 28 2975.0 29 3343.0 30 3809.0 31 4831.0 32 6179.0 33 6971.0 34 7885.0 35 9659.0 36 11546.5 37 12574.0 38 13551.5 39 15739.0 40 18077.5 41 19875.5 42 20545.0 43 20800.5 44 21314.5 45 21345.0 46 21117.0 47 20607.5 48 19259.5 49 17568.0 50 16715.0 51 15594.0 52 13246.0 53 11352.5 54 10686.0 55 9898.0 56 8358.0 57 7009.0 58 6412.0 59 5777.5 60 4812.5 61 4168.5 62 3855.0 63 3617.5 64 3265.0 65 3035.5 66 2777.0 67 2633.0 68 2600.5 69 2496.5 70 2306.0 71 2187.0 72 2145.0 73 1977.0 74 1790.0 75 1729.0 76 1658.5 77 1428.0 78 1141.5 79 1015.0 80 881.5 81 656.0 82 481.5 83 399.0 84 334.5 85 221.5 86 138.5 87 104.0 88 82.5 89 51.5 90 30.5 91 18.0 92 17.0 93 11.5 94 4.5 95 4.5 96 6.0 97 5.0 98 2.5 99 4.5 100 8.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 355883.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.8970059755935 #Duplication Level Percentage of deduplicated Percentage of total 1 71.59576288885496 37.872014973589366 2 15.000807203613556 15.869955765765445 3 6.0323688573640775 9.57282754484915 4 2.427919221491848 5.1371863027005045 5 1.1047450944734274 2.9218853931934246 6 0.6418623261628963 2.037155718152824 7 0.4641576965856156 1.7186786714934916 8 0.3460346576180319 1.4643357881426786 9 0.29742303645988266 1.4159509323207817 >10 2.0151506470990297 19.446889576017405 >50 0.07111483177747356 2.390964495613359 >100 0.002653538499159369 0.1521548381616066 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 2.8099122464405436E-4 0.0 2 0.0 0.0 0.0 2.8099122464405436E-4 0.0 3 0.0 0.0 0.0 2.8099122464405436E-4 0.0 4 0.0 0.0 0.0 2.8099122464405436E-4 0.0 5 0.0 0.0 0.0 2.8099122464405436E-4 0.0 6 0.0 0.0 0.0 2.8099122464405436E-4 0.0 7 0.0 0.0 0.0 2.8099122464405436E-4 0.0 8 0.0 0.0 0.0 2.8099122464405436E-4 0.0 9 0.0 0.0 0.0 2.8099122464405436E-4 0.0 10 0.0 0.0 0.0 8.429736739321631E-4 0.0 11 0.0 0.0 0.0 0.0011239648985762174 0.0 12 0.0 0.0 0.0 0.0011239648985762174 0.0 13 0.0 0.0 0.0 0.0014049561232202718 0.0 14 0.0 0.0 0.0 0.0014049561232202718 0.0 15 0.0 0.0 0.0 0.0014049561232202718 0.0 16 0.0 0.0 0.0 0.0016859473478643262 0.0 17 0.0 0.0 0.0 0.0019669385725083807 0.0 18 0.0 0.0 0.0 0.0025289210217964895 0.0 19 0.0 0.0 0.0 0.0025289210217964895 8.429736739321631E-4 20 0.0 0.0 0.0 0.0025289210217964895 8.429736739321631E-4 21 0.0 0.0 0.0 0.0025289210217964895 8.429736739321631E-4 22 0.0 0.0 0.0 0.0036528859203727067 8.429736739321631E-4 23 0.0 0.0 0.0 0.00449585959430487 8.429736739321631E-4 24 0.0 0.0 0.0 0.006181806942169196 8.429736739321631E-4 25 0.0 0.0 0.0 0.006181806942169196 8.429736739321631E-4 26 0.0 0.0 0.0 0.006743789391457305 8.429736739321631E-4 27 0.0 0.0 0.0 0.01095865776111812 8.429736739321631E-4 28 0.0 0.0 0.0 0.024727227768676783 8.429736739321631E-4 29 0.0 0.0 0.0 0.037652824102303285 8.429736739321631E-4 30 0.0 0.0 0.0 0.04917346431270951 8.429736739321631E-4 31 0.0 0.0 0.0 0.06518996411742062 8.429736739321631E-4 32 0.0 0.0 0.0 0.08289241126999604 8.429736739321631E-4 33 0.0 0.0 0.0 0.11127252495904554 8.429736739321631E-4 34 0.0 0.0 0.0 0.1545451735542299 8.429736739321631E-4 35 0.0 0.0 0.0 0.22170207624415889 8.429736739321631E-4 36 0.0 0.0 0.0 0.3220159434420863 8.429736739321631E-4 37 0.0 0.0 0.0 0.49679248517068814 8.429736739321631E-4 38 0.0 0.0 0.0 0.71315572814661 8.429736739321631E-4 39 0.0 0.0 0.0 0.9829073038049022 8.429736739321631E-4 40 0.0 0.0 0.0 1.2863778264204808 8.429736739321631E-4 41 0.0 0.0 0.0 1.6272201819137189 8.429736739321631E-4 42 0.0 0.0 0.0 2.0177979841689546 8.429736739321631E-4 43 0.0 0.0 0.0 2.4794665662591355 8.429736739321631E-4 44 0.0 0.0 0.0 3.011101963285687 8.429736739321631E-4 45 0.0 0.0 0.0 3.6253487803575895 8.429736739321631E-4 46 0.0 0.0 0.0 4.282587254800033 8.429736739321631E-4 47 0.0 0.0 0.0 4.939263746793188 8.429736739321631E-4 48 0.0 0.0 0.0 5.5498576779447175 8.429736739321631E-4 49 0.0 0.0 0.0 6.154831784603367 8.429736739321631E-4 50 0.0 0.0 0.0 6.746880294928389 8.429736739321631E-4 51 0.0 0.0 0.0 7.323755279122633 8.429736739321631E-4 52 0.0 0.0 0.0 7.924514517411621 8.429736739321631E-4 53 0.0 0.0 0.0 8.516282036511999 8.429736739321631E-4 54 0.0 0.0 0.0 9.116760283576344 8.429736739321631E-4 55 0.0 0.0 0.0 9.799006977012107 8.429736739321631E-4 56 0.0 0.0 0.0 10.44865868838916 8.429736739321631E-4 57 0.0 0.0 0.0 11.078360022816488 8.429736739321631E-4 58 0.0 0.0 0.0 11.726044795621032 8.429736739321631E-4 59 0.0 0.0 0.0 12.28100246429304 8.429736739321631E-4 60 0.0 0.0 0.0 12.862092316856945 8.429736739321631E-4 61 0.0 0.0 0.0 13.41002520491285 8.429736739321631E-4 62 0.0 0.0 0.0 13.959082057867333 8.429736739321631E-4 63 0.0 0.0 0.0 14.522469463278663 8.429736739321631E-4 64 0.0 0.0 0.0 15.1184518507487 8.429736739321631E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTGCGA 20 0.0069481144 52.499996 55 GATTCGC 20 0.0069481144 52.499996 65 ATCGATA 20 0.0069481144 52.499996 23 TCGCTTT 40 0.0024171975 34.999996 11 GAACCGT 40 0.0024171975 34.999996 69 ACCGCGT 55 2.989334E-4 31.81818 8 TTAACGG 45 0.004304504 31.111109 35 TTCGGTC 50 0.0072037852 28.000002 28 CTAGAGC 75 5.577392E-5 28.0 3 GGTTCTA 75 5.577392E-5 28.0 1 GGCCTTA 65 7.948482E-4 26.923077 1 CCGAAAT 70 0.0012248906 25.000002 47 TAGAGCC 75 0.0018305565 23.333334 4 GGTATAC 75 0.0018305565 23.333334 1 TATGACA 90 1.9252341E-4 23.333332 4 CCTTTAC 110 2.916146E-5 22.272726 1 GACCCAA 95 2.776182E-4 22.105263 11 GTGCCGT 95 2.776182E-4 22.105263 70 TAATGTA 80 0.0026635656 21.874998 26 TTAGTAC 100 3.9262735E-4 21.000002 3 >>END_MODULE