##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1781123_1.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 321717 Sequences flagged as poor quality 0 Sequence length 76 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 33.27408871772396 34.0 34.0 34.0 32.0 34.0 2 33.27614331850664 34.0 34.0 34.0 33.0 34.0 3 33.32575835283805 34.0 34.0 34.0 33.0 34.0 4 33.387365293099215 34.0 34.0 34.0 33.0 34.0 5 33.3709844366322 34.0 34.0 34.0 33.0 34.0 6 36.790483561639576 38.0 37.0 38.0 34.0 38.0 7 36.68917091729688 38.0 37.0 38.0 34.0 38.0 8 36.47471535542107 38.0 37.0 38.0 34.0 38.0 9 36.442040675500515 38.0 37.0 38.0 34.0 38.0 10-11 36.35644992337987 38.0 37.0 38.0 34.0 38.0 12-13 36.28595784493825 38.0 37.0 38.0 34.0 38.0 14-15 36.297837851279226 38.0 37.0 38.0 34.0 38.0 16-17 36.25764258649683 38.0 37.0 38.0 34.0 38.0 18-19 36.25044526711365 38.0 37.0 38.0 34.0 38.0 20-21 36.195813401219084 38.0 37.0 38.0 33.5 38.0 22-23 36.23428199318034 38.0 37.0 38.0 34.0 38.0 24-25 36.22807622848653 38.0 37.0 38.0 34.0 38.0 26-27 36.01430449743097 38.0 37.0 38.0 32.0 38.0 28-29 36.00014142864691 38.0 37.0 38.0 32.0 38.0 30-31 36.027640752586905 38.0 37.0 38.0 32.0 38.0 32-33 35.98031188902047 38.0 37.0 38.0 32.0 38.0 34-35 35.98036783881486 38.0 37.0 38.0 32.0 38.0 36-37 35.9470217613617 38.0 37.0 38.0 32.0 38.0 38-39 35.92135013070494 38.0 37.0 38.0 32.0 38.0 40-41 35.9356996988036 38.0 37.0 38.0 32.0 38.0 42-43 35.92657211151416 38.0 37.0 38.0 32.0 38.0 44-45 35.89309703870172 38.0 36.5 38.0 32.0 38.0 46-47 35.90512624449438 38.0 37.0 38.0 32.0 38.0 48-49 35.889816204925445 38.0 37.0 38.0 32.0 38.0 50-51 35.80649141947737 38.0 36.0 38.0 31.0 38.0 52-53 35.84466472085715 38.0 36.0 38.0 31.5 38.0 54-55 35.855717913570004 38.0 36.0 38.0 31.5 38.0 56-57 35.80082184031307 38.0 36.0 38.0 31.0 38.0 58-59 35.80897963116652 38.0 36.0 38.0 31.0 38.0 60-61 35.81127201857533 38.0 36.0 38.0 31.0 38.0 62-63 35.78684060836076 38.0 36.0 38.0 31.0 38.0 64-65 35.73387946549296 38.0 36.0 38.0 31.0 38.0 66-67 35.72044996067973 38.0 36.0 38.0 31.0 38.0 68-69 35.67374586981727 38.0 36.0 38.0 31.0 38.0 70-71 35.61572748720148 38.0 36.0 38.0 31.0 38.0 72-73 35.56071018939005 38.0 36.0 38.0 31.0 38.0 74-75 35.56881669293199 38.0 36.0 38.0 31.0 38.0 76 34.71164408470799 37.0 34.0 38.0 27.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 4.0 21 14.0 22 42.0 23 94.0 24 212.0 25 434.0 26 903.0 27 1543.0 28 2672.0 29 4283.0 30 6624.0 31 9904.0 32 14111.0 33 19561.0 34 26586.0 35 36870.0 36 56356.0 37 141503.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 45.33922671167517 18.448201369526636 10.113857831572469 26.098714087225726 2 23.31863097069785 21.096802469250925 30.949250428171343 24.635316131879883 3 20.367279316915177 22.44581417829956 29.253660826129796 27.933245678655467 4 14.269062561195087 17.362153694085176 36.41709950049267 31.951684244227067 5 13.688428028360331 34.08647973218699 36.017058470643455 16.208033768809234 6 30.191130714261295 37.769219531451554 18.04380868900307 13.995841065284084 7 28.95588358712782 29.907651756046462 21.402039680837508 19.73442497598821 8 25.66727900608299 35.57101427652253 19.168088723940606 19.593617993453876 9 24.5858938135069 17.202696780089333 20.967185445593486 37.24422396081028 10-11 25.035978826111148 25.39250334921686 27.175281380840925 22.396236443831068 12-13 25.114153122153944 23.148605762207158 26.979457100495157 24.757784015143745 14-15 22.88315507107178 23.98909600673884 23.890562202183908 29.23718672000547 16-17 23.719604497120137 27.72421103019113 24.938377518129286 23.61780695455944 18-19 23.416698526966247 27.004479091872668 26.105396979332767 23.473425401828315 20-21 22.752605550841267 26.99888411243422 26.035925984638673 24.212584352085837 22-23 23.046031139168896 26.931744359172814 26.307437903499036 23.71478659815925 24-25 23.33961214359204 27.027480674008526 26.36929350951302 23.263613672886418 26-27 22.74359141730154 27.407006779250086 26.5279733430313 23.321428460417074 28-29 22.583046590637114 26.627905892445845 27.169220153115937 23.619827363801104 30-31 22.86155223379554 27.58589070518499 26.576618580926713 22.975938480092754 32-33 22.833888168794314 27.499168523889004 26.54957618030754 23.117367127009143 34-35 22.932732805540272 26.93205519136384 27.217243726629302 22.91796827646658 36-37 22.873363857054493 26.81300646220125 27.054678490723212 23.258951190021044 38-39 22.25791611882493 26.88045704765368 27.482849833860197 23.378776999661195 40-41 22.53673259417438 26.144251003210893 27.924697793402274 23.394318609212444 42-43 22.932888221635785 26.00779567135091 27.54734751349789 23.51196859351542 44-45 21.904966165916008 26.777571592424398 27.730427674011633 23.58703456764796 46-47 22.5642412430801 25.83699338238265 27.596614415775356 24.00215095876189 48-49 22.042509410444584 25.9045993839306 28.144766984647994 23.90812422097682 50-51 21.559787017782707 26.008883584019493 28.43881423735768 23.992515160840117 52-53 21.234190297683988 25.632776632879207 29.299197742114963 23.83383532732184 54-55 20.60413344647625 26.33106115001694 28.945936957015018 24.118868446491792 56-57 21.011012784528017 26.114255696776983 28.169478143834485 24.705253374860515 58-59 20.558285698300057 25.854555401175567 28.986655974039294 24.600502926485078 60-61 20.93097349533907 26.37364516018737 28.164349412682576 24.531031931790984 62-63 20.00609231094409 26.710121006971967 28.06472769545905 25.219058986624894 64-65 20.148453454433554 26.932987687936915 27.453165359617305 25.46539349801223 66-67 20.32236406531206 26.91060777018311 26.84206927206209 25.924958892442735 68-69 20.23533105182505 27.163003509295436 26.830723897089676 25.77094154178983 70-71 20.525026653860383 27.0694430197969 26.28925422032407 26.116276106018642 72-73 20.523783325096282 26.523000027974895 26.262056403609385 26.69116024331944 74-75 20.572739395182722 26.936096009847166 25.92091807395941 26.570246521010706 76 20.85124503834115 27.14031275935061 25.566258543999854 26.442183658308387 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 0.0 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.5 8 1.0 9 1.0 10 1.5 11 1.5 12 1.0 13 4.5 14 13.5 15 33.0 16 67.0 17 87.0 18 122.0 19 218.5 20 325.5 21 371.0 22 505.0 23 812.5 24 1178.0 25 1370.0 26 1655.5 27 2190.0 28 2786.5 29 3134.0 30 3552.5 31 4453.5 32 5652.5 33 6369.0 34 7038.5 35 8503.5 36 10077.5 37 10856.0 38 11956.5 39 14485.5 40 16947.0 41 18508.0 42 19036.0 43 19118.0 44 19148.5 45 19065.0 46 19033.0 47 18689.0 48 17412.5 49 15807.0 50 15134.0 51 13979.5 52 11762.5 53 10160.5 54 9621.0 55 8913.5 56 7544.5 57 6280.0 58 5677.0 59 5067.0 60 4167.5 61 3591.0 62 3304.0 63 3102.5 64 2836.5 65 2694.5 66 2451.5 67 2286.0 68 2292.5 69 2207.5 70 2087.5 71 2059.0 72 1995.5 73 1854.0 74 1685.5 75 1595.0 76 1496.0 77 1297.5 78 1082.5 79 967.0 80 870.5 81 652.5 82 461.0 83 391.0 84 322.5 85 215.5 86 150.0 87 123.0 88 87.0 89 35.5 90 21.0 91 13.5 92 5.0 93 3.0 94 2.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-11 0.0 12-13 0.0 14-15 0.0 16-17 0.0 18-19 0.0 20-21 0.0 22-23 0.0 24-25 0.0 26-27 0.0 28-29 0.0 30-31 0.0 32-33 0.0 34-35 0.0 36-37 0.0 38-39 0.0 40-41 0.0 42-43 0.0 44-45 0.0 46-47 0.0 48-49 0.0 50-51 0.0 52-53 0.0 54-55 0.0 56-57 0.0 58-59 0.0 60-61 0.0 62-63 0.0 64-65 0.0 66-67 0.0 68-69 0.0 70-71 0.0 72-73 0.0 74-75 0.0 76 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 76 321717.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.4875540708617 #Duplication Level Percentage of deduplicated Percentage of total 1 61.30722049259617 27.887155070912083 2 20.738810940160693 18.867155680118753 3 8.287949164037062 11.309956072070666 4 3.2617825182403437 5.934820346633963 5 1.4535492339181917 3.3059199686256675 6 0.8059924499373425 2.1997575088338697 7 0.601320636824452 1.9146823487034077 8 0.45401907007741454 1.6521773599478995 9 0.39466349543014545 1.6157049379356618 >10 2.5986533187680445 21.553520825015152 >50 0.0878067931521817 2.506307947690018 >100 0.007545896286515615 0.5011367734051505 >500 0.0 0.0 >1k 6.859905715014196E-4 0.7517051601077258 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTTATACACATCTCCGAGCCCACGAGACCAAGAATTATCTCGTATGCCGT 2409 0.7487947481793005 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 6.216643820500627E-4 0.0 2 0.0 0.0 0.0 6.216643820500627E-4 0.0 3 0.0 0.0 0.0 6.216643820500627E-4 0.0 4 0.0 0.0 0.0 6.216643820500627E-4 0.0 5 0.0 0.0 0.0 6.216643820500627E-4 0.0 6 0.0 0.0 0.0 6.216643820500627E-4 0.0 7 0.0 0.0 0.0 6.216643820500627E-4 0.0 8 0.0 0.0 0.0 6.216643820500627E-4 0.0 9 0.0 0.0 0.0 6.216643820500627E-4 0.0 10 0.0 0.0 0.0 0.0012433287641001253 0.0 11 0.0 0.0 0.0 0.0015541609551251567 0.0 12 0.0 0.0 0.0 0.0015541609551251567 0.0 13 0.0 0.0 0.0 0.001864993146150188 0.0 14 0.0 0.0 0.0 0.001864993146150188 0.0 15 0.0 0.0 0.0 0.0021758253371752193 0.0 16 0.0 0.0 0.0 0.0024866575282002507 0.0 17 0.0 0.0 0.0 0.002797489719225282 0.0 18 0.0 0.0 0.0 0.003729986292300376 0.0 19 0.0 0.0 0.0 0.004040818483325407 0.0 20 0.0 0.0 0.0 0.004040818483325407 0.0 21 0.0 0.0 0.0 0.004040818483325407 0.0 22 0.0 0.0 0.0 0.004040818483325407 0.0 23 0.0 0.0 0.0 0.005284147247425533 0.0 24 0.0 0.0 0.0 0.006838308202550689 0.0 25 0.0 0.0 0.0 0.006838308202550689 0.0 26 0.0 0.0 0.0 0.007459972584600752 0.0 27 0.0 0.0 0.0 0.01181162325895119 0.0 28 0.0 0.0 0.0 0.026731568428152695 0.0 29 0.0 0.0 0.0 0.0407190170242791 0.0 30 0.0 0.0 0.0 0.05190897590118023 0.0 31 0.0 0.0 0.0 0.06838308202550689 0.0 32 0.0 0.0 0.0 0.08703301348700877 0.0 33 0.0 0.0 0.0 0.12091372230873718 0.0 34 0.0 0.0 0.0 0.16847104753556696 0.0 35 0.0 0.0 0.0 0.24182744461747435 0.0 36 0.0 0.0 0.0 0.35092954366726037 0.0 37 0.0 0.0 0.0 0.5402263480015044 0.0 38 0.0 0.0 0.0 0.7755263166074531 0.0 39 0.0 0.0 0.0 1.0630460933056072 0.0 40 0.0 0.0 0.0 1.3844465788254894 0.0 41 0.0 0.0 0.0 1.7474985779427261 0.0 42 0.0 0.0 0.0 2.162770385152168 0.0 43 0.0 0.0 0.0 2.6588585620281178 0.0 44 0.0 0.0 0.0 3.2245731496936747 0.0 45 0.0 0.0 0.0 3.8794965761834157 0.0 46 0.0 0.0 0.0 4.577936509416661 0.0 47 0.0 0.0 0.0 5.268294805683256 0.0 48 0.0 0.0 0.0 5.9086091191948205 0.0 49 0.0 0.0 0.0 6.54674760736921 0.0 50 0.0 0.0 0.0 7.171520311329522 0.0 51 0.0 0.0 0.0 7.771737272198858 0.0 52 0.0 0.0 0.0 8.408321599418121 0.0 53 0.0 0.0 0.0 9.022526008883585 0.0 54 0.0 0.0 0.0 9.657867007338748 0.0 55 0.0 0.0 0.0 10.36594273849377 0.0 56 0.0 0.0 0.0 11.051638551894989 0.0 57 0.0 0.0 0.0 11.736401868723133 0.0 58 0.0 0.0 0.0 12.40469107942695 0.0 59 0.0 0.0 0.0 13.022625475184713 0.0 60 0.0 0.0 0.0 13.622842436054048 0.0 61 0.0 0.0 0.0 14.205341962034955 0.0 62 0.0 0.0 0.0 14.785976494869715 0.0 63 0.0 0.0 0.0 15.369719349614723 0.0 64 0.0 0.0 0.0 15.99169456385581 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAGAAT 15 0.0022234444 70.0 14 CGTATGC 390 0.0 52.94872 41 TCGTATG 400 0.0 52.500004 40 CGTGCGA 20 0.0069475113 52.499996 10 CTCGTAT 380 0.0 51.578945 39 TATGCCG 395 0.0 51.392406 43 TCTCGTA 335 0.0 51.194027 38 CGTCTTC 375 0.0 50.399998 48 CCGTCTT 390 0.0 50.25641 47 TACGCGC 50 6.182927E-8 49.000004 70 ATCTCGT 355 0.0 48.30986 37 GTATGCC 440 0.0 47.727272 42 ATGCCGT 420 0.0 47.5 44 TGCCGTC 420 0.0 47.5 45 GCCGTCT 430 0.0 47.2093 46 GTACGCG 55 1.3086719E-7 44.545452 69 CTTGAAA 430 0.0 43.953487 57 GTGTACG 60 2.5920417E-7 40.833332 67 TATCTCG 415 0.0 40.48193 36 CTGCTTG 460 0.0 40.326088 54 >>END_MODULE