SRR1781120_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781120_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	274419
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	44045	16.050273486894127	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	8002	2.9159788498609793	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	2436	0.8876936363735747	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	1712	0.6238635079932512	No Hit
ATTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	1708	0.6224058829745754	No Hit
ATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTCTT	1650	0.601270320203776	TruSeq Adapter, Index 10 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTC	1054	0.3840841924210787	No Hit
CTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	510	0.1858471898811671	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	485	0.17673703351444325	No Hit
TTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTC	472	0.17199975220374683	No Hit
CTTATACACATCTCCGAGCCAACGAGACACCGGCTAATCTCGTATGCCGT	413	0.15049978317827847	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	403	0.14685572063158892	No Hit
CTTTACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTC	382	0.13920318928354086	No Hit
CTTATACACATCTCCGAGCCCACGAGACACAGGCTAATCTCGTATGCCGT	356	0.12972862666214802	No Hit
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATATCGTATGCCGT	345	0.12572015786078952	No Hit
TATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTCT	336	0.12244050156876893	No Hit
CTTAATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	296	0.10786425138201072	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCATCGT	15	0.0022235077	69.99673	69
CGACTTA	20	7.919718E-5	69.99673	48
GCCGTAA	15	0.0022235077	69.99673	46
TGCCGTA	90	0.0	66.10801	45
AGGGGGG	5780	0.0	63.093925	70
GCCGTAT	90	0.0	62.219307	46
CTTAAGC	30	8.365494E-6	58.330605	51
CTCGAAA	30	8.365494E-6	58.330605	39
GAACACG	50	9.786163E-10	55.99738	18
ATTATAC	510	0.0	54.929413	1
TAAGCCG	115	0.0	54.780045	43
ATCTCGA	130	0.0	53.843628	37
CGGATAA	65	3.6379788E-12	53.843628	31
CTTTATA	335	0.0	53.310226	2
AACGTAT	20	0.006947713	52.497543	39
GGTACGT	20	0.006947713	52.497543	12
GTATTCT	100	0.0	52.497543	49
CGTCTTA	80	0.0	52.497543	48
ATATCCG	100	0.0	52.497543	10
GCCGAAA	20	0.006947713	52.497543	46