SRR1781117_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781117_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	407572
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	36580	8.97510133178923	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCG	6805	1.6696436457852843	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	2230	0.5471425907569706	No Hit
ATTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGT	1418	0.3479139882033113	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCCGCTCCATCTCGTATGCCGT	1259	0.30890247612691746	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCC	1246	0.305712855642684	No Hit
ATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTCTT	1187	0.29123688575270135	Illumina PCR Primer Index 11 (95% over 22bp)
CTATACACATCTCCGAGCCCACGAGACGACGCTCCATCTCGTATGCCGTC	699	0.17150343988301453	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACTTA	15	0.0022243042	69.99657	48
CGTCATA	20	7.924413E-5	69.99657	48
AGGGGGG	4785	0.0	62.31669	70
ACGTATG	30	8.372866E-6	58.33047	40
CACGTAT	30	8.372866E-6	58.33047	39
ACGACGA	80	0.0	56.87221	27
TATGACG	185	0.0	56.75397	43
GTATGAC	180	0.0	56.38612	42
GAAGCTA	25	2.389779E-4	55.997253	29
TTAGACC	25	2.389779E-4	55.997253	19
TGCCGTA	50	9.804353E-10	55.997253	45
CGTATGA	205	0.0	54.631466	41
TGACGTC	185	0.0	52.970375	45
CGTCTTA	60	8.367351E-11	52.497425	48
ATTCCGT	20	0.006950182	52.497425	44
AATCTCG	160	0.0	52.497425	36
CGTCTTC	6165	0.0	51.433002	48
GCCGTCT	6145	0.0	51.37258	46
CCGTCTT	6090	0.0	51.261856	47
TATGCCG	6335	0.0	51.102467	43