SRR1781116_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781116_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	284711
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	39419	13.845267657378885	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	7186	2.5239628957082796	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	2429	0.8531458215523811	No Hit
ATTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	1575	0.5531925355887198	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	1240	0.43552936135238896	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCTT	1194	0.419372626979639	TruSeq Adapter, Index 9 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTC	755	0.26518118372665617	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	415	0.14576184271067855	No Hit
CTTATACACATCTCCGAGCCCACGAGACGGAGAAAGATCTCGTATGCCGT	391	0.13733224216837425	No Hit
CTTATACACATCTCCGAGCCAACGAGACGGAGTAAGATCTCGTATGCCGT	345	0.12117550779562433	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	344	0.12082427443969498	No Hit
CTTTACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTC	330	0.11590700745668416	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACTT	80	0.0	65.61973	47
AGGGGGG	4935	0.0	64.03741	70
GCCGACT	85	0.0	61.75975	46
TGCCGAC	85	0.0	61.75975	45
ATATCCG	80	0.0	61.24508	10
GCCGTAT	40	1.0639269E-8	61.24508	46
GCCATAG	35	2.9516195E-7	60.047916	1
AAGCCGT	30	8.367957E-6	58.32865	44
CGACTTC	110	0.0	57.26813	48
CTTTATA	280	0.0	55.043922	2
ATCTCGA	90	0.0	54.440075	37
GCCGTCA	85	0.0	53.525116	46
CCATAGA	40	7.4232776E-7	52.541924	2
TGCCGTA	60	8.367351E-11	52.49579	45
GTCTGCC	20	0.006948899	52.495785	42
CGTCTAC	80	0.0	52.495785	48
TCAGCAT	40	7.468425E-7	52.495785	53
AACGAGC	40	7.468425E-7	52.495785	13
AACTCGT	80	0.0	52.495785	37
CGGTATG	20	0.006948899	52.495785	43