SRR1781100_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781100_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	667327
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	51863	7.77175207956519	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCG	5143	0.7706866348881433	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	2168	0.32487820813484247	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	1014	0.1519494940261671	No Hit
ATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTCTT	994	0.14895246258580874	TruSeq Adapter, Index 7 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTC	783	0.11733378089002842	No Hit
CTAATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	698	0.10459639726850553	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	690	0.10339758469236221	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGAATT	20	7.928115E-5	69.99655	47
TAAGACG	15	0.002224929	69.99655	43
AGGGGGG	6210	0.0	62.50095	70
AACGTAT	40	1.0666554E-8	61.246986	39
CCGACTT	40	1.0666554E-8	61.246986	47
CACGTAT	115	0.0	60.86657	39
ACGTATG	140	0.0	59.997044	40
TATGCCG	7520	0.0	56.8722	43
ATCGTAT	80	0.0	56.8722	39
CGTCTTC	6840	0.0	56.846615	48
CGTATGC	7430	0.0	56.760323	41
GCCGTCT	7105	0.0	56.745975	46
CCGTCTT	7095	0.0	56.628643	47
TCTTCTG	6795	0.0	56.450497	50
TCGTATG	7435	0.0	56.43972	40
TCTCGTA	7440	0.0	56.35475	38
CATCTCG	7525	0.0	56.322807	36
CTCGTAT	7410	0.0	56.29952	39
TGCCGTC	7405	0.0	56.24301	45
ATGCCGT	7610	0.0	56.15361	44