SRR1781087_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781087_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	611765
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	61913	10.12038936519742	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	8864	1.4489223803257787	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	3299	0.5392593561253095	No Hit
ATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTCTT	1913	0.3127017727395323	RNA PCR Primer, Index 19 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	1838	0.30044216324896	No Hit
CTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTC	1415	0.23129796572213188	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	1366	0.22328835418829124	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	7825	0.0	61.187073	70
CGTCTAC	70	0.0	54.99872	48
AACTCGT	110	0.0	54.089645	37
TCTACGA	185	0.0	52.971737	11
ATCGTAA	20	0.0069511314	52.498775	39
AAACTCG	135	0.0	51.85064	36
CGTCTTC	9515	0.0	51.496433	48
TCGTATG	10060	0.0	51.385475	40
GCCGTCT	9530	0.0	51.378654	46
TATGCCG	9745	0.0	51.35847	43
CTCGTAT	9950	0.0	51.355583	39
CGTATGC	9895	0.0	51.3227	41
TCTCGTA	9930	0.0	51.31804	38
CCGTCTT	9465	0.0	51.250782	47
AATCTCG	9975	0.0	51.191788	36
ATCTCGT	9975	0.0	51.086525	37
GTATGCC	9820	0.0	51.00186	42
ATGCCGT	9790	0.0	50.943653	44
TGCCGTC	9725	0.0	50.92426	45
CTTGAAA	9970	0.0	50.796207	57