SRR1781086_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781086_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	919051
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	56783	6.178438410926053	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	6003	0.653173762935898	No Hit
CATATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	3325	0.3617862338433885	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	3297	0.35873961292681256	No Hit
ATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCTT	1395	0.1517870063794066	Illumina PCR Primer Index 3 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	1237	0.13459535977872827	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTC	987	0.10739338730930056	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	7135	0.0	64.6009	70
TATGCCG	9165	0.0	54.110825	43
CGTATGC	9250	0.0	53.99195	41
GCCGTCT	9055	0.0	53.956497	46
CCGTCTT	9010	0.0	53.95407	47
CGTCTTC	9095	0.0	53.95008	48
ATGCCGT	9220	0.0	53.939877	44
TCGTATG	9435	0.0	53.93483	40
CTCGTAT	9370	0.0	53.860756	39
TCTCGTA	9380	0.0	53.840645	38
TGCCGTC	9190	0.0	53.77321	45
ATCTCGT	9410	0.0	53.70619	37
GTATGCC	9285	0.0	53.373802	42
CATCTCG	9470	0.0	53.10722	36
TGCCGAC	60	8.367351E-11	52.49743	45
GTCTTCT	9380	0.0	52.236244	49
CTTGAAA	9550	0.0	52.00269	57
CTGCTTG	9390	0.0	51.73336	54
GCATCTC	9725	0.0	51.642715	35
ATGCATC	9805	0.0	51.39983	33