SRR1781074_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781074_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	386161
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	62022	16.06117655589249	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	7647	1.9802621186499934	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	3595	0.9309588487703315	No Hit
CATATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGT	1992	0.5158470171767734	No Hit
ATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTCTT	1762	0.45628636760315	Illumina PCR Primer Index 3 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCC	1569	0.4063072138305007	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTC	1176	0.30453619086339634	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCGTC	524	0.13569469728947253	No Hit
CTTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	500	0.1294796729861379	No Hit
ACTTATACACATCTCCGAGCCCACGAGACTTTAATGCATCTCGTATGCCG	445	0.11523690895766274	No Hit
CTTATACACATCTCCGAGCCAACGAGACTTTAATGCATCTCGTATGCCGT	419	0.10850396596238357	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCT	15	0.0022239785	69.99844	14
AGGGGGG	7735	0.0	64.88544	70
GCCGTAT	90	0.0	62.22084	46
GCCGACT	75	0.0	60.66532	46
CGAATGC	115	0.0	57.8248	41
GACGAAT	25	2.389305E-4	55.998753	46
ACGAATT	25	2.389305E-4	55.998753	47
CGTATGA	240	0.0	55.415436	41
CTCGTAT	10140	0.0	53.56883	39
TCGTATG	10220	0.0	53.491966	40
CGTATGC	10035	0.0	53.431797	41
CATCTCG	10180	0.0	53.427105	36
ATCTCGT	10205	0.0	53.399105	37
GCCGTCT	9825	0.0	53.398304	46
TCTCGTA	10225	0.0	53.39735	38
CCGTCTT	9780	0.0	53.35771	47
TGCCGTA	105	0.0	53.33215	45
TATGCCG	9960	0.0	53.30705	43
GCATCTC	10240	0.0	53.28495	35
GTATGCC	9955	0.0	53.26351	42