SRR1781073_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781073_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	760432
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	62798	8.258200601763209	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCG	7270	0.9560355166536916	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	3260	0.4287036842216004	No Hit
CATATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	1907	0.2507785048498748	No Hit
ATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGTCTT	1697	0.22316262335093737	RNA PCR Primer, Index 34 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	1470	0.19331117049256213	No Hit
CTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGTC	1220	0.16043512108906516	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTAT	15	0.0022249124	69.997635	46
TGACGTA	30	1.02405465E-7	69.997635	45
TCGTAAT	15	0.0022249124	69.997635	40
AGGGGGG	7935	0.0	61.22036	70
AGCCGTC	150	0.0	58.33136	45
CGAATGC	110	0.0	57.27079	41
TATGACG	225	0.0	55.998104	43
CGACTTA	25	2.3909201E-4	55.998104	48
CGTATGA	195	0.0	55.639145	41
GCCGACT	90	0.0	54.442604	46
TGCCGTA	175	0.0	53.998173	45
TCTCGTA	9865	0.0	53.25213	38
GCCGTCT	9445	0.0	53.06332	46
CTCGTAT	9745	0.0	53.04592	39
TCGTATG	9940	0.0	52.99117	40
CCGTCTT	9425	0.0	52.953117	47
CGTATGC	9830	0.0	52.943275	41
CGTCTTC	9315	0.0	52.90213	48
TATGCCG	9785	0.0	52.864845	43
GGATCTC	9960	0.0	52.849617	35