SRR1781072_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781072_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	496017
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	61152	12.328609704909308	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	7016	1.4144676492942783	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	3583	0.7223542741478618	No Hit
CATATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	2044	0.41208265039303094	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	1647	0.3320450710358718	No Hit
ATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTCTT	1624	0.32740813318898343	TruSeq Adapter, Index 10 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTC	1072	0.21612162486366396	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	7805	0.0	64.12251	70
CGTCTAC	115	0.0	60.86667	48
CCGGCAA	145	0.0	60.341957	30
CGGATAA	105	0.0	59.99715	31
ACGTATG	105	0.0	56.663975	40
CGACTTA	25	2.3902686E-4	55.99734	48
AACGTAT	45	2.7004717E-8	54.441853	39
AATCTCG	10245	0.0	52.984306	36
CGAATGC	185	0.0	52.97046	41
CGTATGC	10165	0.0	52.712696	41
CTCGTAT	10135	0.0	52.696064	39
TATGCCG	9985	0.0	52.681522	43
TCTCGTA	10185	0.0	52.67791	38
GCCGTCT	9885	0.0	52.61257	46
TCGTATG	10375	0.0	52.59027	40
ATGCCGT	10045	0.0	52.5759	44
CCGTCTT	9790	0.0	52.551125	47
GTACGGA	20	0.0069371797	52.523975	6
CGTCTTC	9925	0.0	52.506317	48
ACCGGAT	100	0.0	52.497505	29