SRR1781071_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781071_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	405981
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	57030	14.047455422790723	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCG	6739	1.6599298981972062	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	3306	0.8143238230360533	No Hit
CATATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	1571	0.38696392195693885	No Hit
ATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTCTT	1425	0.3510016478603678	RNA PCR Primer, Index 14 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCC	1308	0.3221825651939376	No Hit
CTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTC	1017	0.2505043339466625	No Hit
CTTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCG	495	0.12192688820412778	No Hit
CTTTACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGTC	471	0.11601528150332159	No Hit
CTTATACACATCTCCGAGCCCACGAGACCGGTTACCATCTCGTATGCCGT	416	0.10246784948064072	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTCAA	25	2.8389877E-6	69.99458	47
AACTCGA	20	7.9254896E-5	69.994576	37
AGGGGGG	7025	0.0	64.016396	70
ACCGGTA	70	0.0	59.995354	27
CGTCAAC	35	2.972738E-7	59.995354	48
GACGTCA	30	8.3742125E-6	58.32882	46
GTTACCA	125	0.0	55.995663	31
CCGACTT	70	0.0	54.995743	47
CGTATGA	230	0.0	54.77837	41
CGAATGC	85	0.0	53.52527	41
GCCGTCA	230	0.0	53.25675	46
TCTCGTA	9080	0.0	53.112625	38
CATCTCG	8955	0.0	53.11147	36
CTCGTAT	9030	0.0	53.096664	39
TATGCCG	8905	0.0	53.09527	43
TCGTATG	9155	0.0	53.059795	40
GCCGTCT	8685	0.0	53.02986	46
CGTATGC	8960	0.0	53.003708	41
ATGCCGT	8875	0.0	52.998714	44
ATCTCGT	9075	0.0	52.94907	37