SRR1781067_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781067_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	502802
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	57543	11.444465216924355	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	6454	1.2836066682312322	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	3226	0.6416044486696553	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTAGTATGCCGT	2271	0.45166884777705735	No Hit
CATATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	1287	0.2559655689515953	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	1261	0.25079454735661355	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	1206	0.2398558478287676	TruSeq Adapter, Index 2 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	829	0.16487603470153261	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATCCTGTATCTCGTATGCCGT	755	0.1501585117004308	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGACGT	552	0.10978476617038119	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACTTA	20	7.9254E-5	69.99802	48
ACGTATG	15	0.002224425	69.99801	40
AGGGGGG	6815	0.0	63.83531	70
AATCCGT	25	2.3900751E-4	55.99841	44
CTGGTCG	25	2.3900751E-4	55.99841	9
CGTCTTC	7160	0.0	55.773556	48
GCCGTCT	8030	0.0	55.658447	46
CTGCTTG	7020	0.0	55.489876	54
CCGTCTT	8030	0.0	55.440517	47
GTCTTCT	6975	0.0	55.346096	49
TATGCCG	9035	0.0	55.16169	43
TCTTCTG	7005	0.0	55.15903	50
TGCCGTC	8675	0.0	55.07048	45
TCGTATG	8805	0.0	55.012638	40
ATGCCGT	9050	0.0	54.915565	44
CGTATGC	8675	0.0	54.909103	41
CTTGAAA	8515	0.0	54.831093	57
CTCGTAT	8810	0.0	54.78278	39
TCTCGTA	8900	0.0	54.740017	38
CTTCTGC	7040	0.0	54.636234	51