SRR1781056_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781056_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	348319
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	47305	13.580941608123586	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCG	7163	2.0564482557655483	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	2864	0.8222347905224808	No Hit
ATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTCTT	1233	0.3539858577912775	TruSeq Adapter, Index 9 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCC	1233	0.3539858577912775	No Hit
ATTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	994	0.28537059419669897	No Hit
CTATACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGTC	876	0.25149360212908284	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGGAGTAAGATCTCGTATGCCGT	442	0.12689517367700298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAC	75	0.0	65.33012	48
AGGGGGG	5815	0.0	64.038124	70
AACTCGT	60	1.8189894E-12	58.330463	37
GCCGTAT	30	8.370325E-6	58.330463	46
CCGACTT	25	2.389297E-4	55.997246	47
CGCGTTA	25	2.389297E-4	55.997246	28
ACGCGTT	25	2.389297E-4	55.997246	27
TATGACG	150	0.0	55.997242	43
CGTATGA	165	0.0	55.148804	41
GACGACT	20	0.0069493437	52.497414	46
CGAAGTA	20	0.0069493437	52.497414	28
ACGAAGT	20	0.0069493437	52.497414	27
CGTCTTC	7545	0.0	52.46263	48
TCGTATG	7830	0.0	52.38567	40
CCGTCTT	7465	0.0	52.368484	47
CTCGTAT	7795	0.0	52.351494	39
GCCGTCT	7550	0.0	52.33517	46
TATGCCG	7640	0.0	52.314175	43
TCTCGTA	7790	0.0	52.250317	38
AGATCTC	7690	0.0	52.247105	35