SRR1781055_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781055_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	470429
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	46150	9.810194524572251	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	6788	1.4429382542317757	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	2882	0.6126322994543278	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTAGTATGCCGT	1909	0.40579981251155856	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	1267	0.26932863407655566	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	858	0.18238671510472357	TruSeq Adapter, Index 2 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	714	0.15177635732490982	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATCCTGTATCTCGTATGCCGT	682	0.14497405559606233	No Hit
ATTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	535	0.11372598202916911	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GACGTAT	50	1.4551915E-11	62.997414	46
AGGGGGG	5655	0.0	61.889587	70
GCAGCGT	50	9.786163E-10	56.015564	1
CGTCTTC	6020	0.0	53.13736	48
GTCTTCT	5755	0.0	53.029972	49
GCCGTCT	6695	0.0	52.850708	46
CCGTCTT	6685	0.0	52.825054	47
CCGGATT	20	0.0069506243	52.49785	47
CGTCTAC	20	0.0069506243	52.49785	48
ACGTATT	60	8.367351E-11	52.49785	47
CACGTAT	20	0.0069506243	52.49785	39
TATGCCG	7435	0.0	52.391933	43
TCTTCTG	5850	0.0	52.288452	50
TGCCGTC	7030	0.0	52.273815	45
TCTCGTA	7440	0.0	52.07448	38
CGTATGC	7175	0.0	52.046646	41
CTCGTAT	7280	0.0	52.0171	39
ATGCCGT	7470	0.0	52.0059	44
CTGCTTG	5890	0.0	51.992775	54
TTCTGCT	5720	0.0	51.94717	52