SRR1781052_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781052_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	254272
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	43644	17.164296501384342	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCG	6759	2.658177070224012	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	2381	0.9363988170148503	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	1306	0.5136232066448527	No Hit
ATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTCTT	917	0.36063742763654666	TruSeq Adapter, Index 7 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTC	726	0.28552101686383086	No Hit
ATTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	634	0.24933929020891013	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTAGTATGCCGT	475	0.18680782783790587	No Hit
CTTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCG	419	0.16478416813491065	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCACGTATGCCGT	337	0.1325352378555248	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGACGT	316	0.12427636546690159	No Hit
CTTTACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTC	308	0.1211301283664737	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCC	286	0.11247797634029699	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	285	0.11208469670274351	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGT	285	0.11208469670274351	No Hit
TTATACACATCTCCGAGCCCACGAGACCTTGGGTCATCTCGTATGCCGTC	276	0.10854517996476214	No Hit
CTTATACACATCTCCGAGCCAACGAGACCTTGGGTCATCTCGTATGCCGT	257	0.10107286685124592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATCCG	45	5.456968E-12	70.009636	10
GTTCGCT	15	0.002221693	70.009636	11
TTCGTGA	20	7.9190795E-5	69.99587	27
AGGGGGG	5130	0.0	64.67455	70
TAAGACG	35	2.9678995E-7	59.99646	43
GCGTATG	35	2.9678995E-7	59.99646	40
TCACGTA	115	0.0	57.822678	38
GCCGTAA	55	3.6379788E-11	57.26935	46
CGTCTAC	25	2.3881804E-4	55.996696	48
TCGCGTA	25	2.3881804E-4	55.996696	38
ATCACGT	120	0.0	55.413395	37
CGTCTTA	415	0.0	54.816044	48
CGTCATA	45	2.6937414E-8	54.44123	48
CACGTAT	110	0.0	54.087715	39
GCCGTCT	6670	0.0	52.83796	46
TGCCGTC	6905	0.0	52.813683	45
CCGTCTT	6655	0.0	52.79929	47
ATGCCGT	7075	0.0	52.682404	44
TATGCCG	7090	0.0	52.669674	43
ACCTTAC	20	0.006936662	52.517555	6