SRR1781051_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781051_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	441027
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	53846	12.209229820396484	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	8520	1.9318545123087703	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	3042	0.6897536885496807	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCC	1694	0.38410346758815217	No Hit
ATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTCTT	1409	0.3194815736904997	RNA PCR Primer, Index 19 (95% over 23bp)
CTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTC	1099	0.24919109260884256	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	1070	0.24261553147539722	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGTC	477	0.10815664347080792	RNA PCR Primer, Index 19 (95% over 21bp)
CTTTATACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCG	475	0.10770315649608754	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTTATGAAAATCTCGTATGCCGT	463	0.10498223464776534	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTAAG	20	7.924033E-5	69.99853	50
GCACGCT	15	0.0022241783	69.99853	39
CGACACT	20	7.924033E-5	69.99853	23
CGTAATC	20	7.924033E-5	69.99853	48
CGACTTA	15	0.0022241783	69.99853	48
TAAGACG	20	7.924033E-5	69.99853	43
GCCGTAA	30	1.02298145E-7	69.99853	46
AGGGGGG	6710	0.0	63.11343	70
TGCCGTA	50	1.4551915E-11	62.99867	45
AGCCGAC	30	8.37261E-6	58.332104	45
ATGACGA	30	8.37261E-6	58.332104	44
GACCTTC	25	2.3869885E-4	56.01152	1
TCTGCCG	25	2.3896652E-4	55.998817	43
GTCTGCC	25	2.3896652E-4	55.998817	42
CGTCTGC	25	2.3896652E-4	55.998817	41
CAGCTGC	25	2.3896652E-4	55.998817	59
AACTCGA	25	2.3896652E-4	55.998817	37
TGACGTC	165	0.0	55.150352	45
TATGACG	185	0.0	54.86371	43
GACCACG	185	0.0	54.86371	18