SRR1781048_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781048_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	438163
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	40889	9.331915291797802	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	6689	1.5266008311975225	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	2726	0.6221429011577884	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	1432	0.3268190148415087	No Hit
ATTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	1059	0.24169087759578056	No Hit
ATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTCTT	1043	0.23803926849140616	TruSeq Adapter, Index 10 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTC	761	0.17367965802680738	No Hit
CTTAAACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	500	0.11411278451169998	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTCTCG	15	0.0022241843	69.998405	23
ACGAATA	15	0.0022241843	69.998405	47
AGGGGGG	5225	0.0	63.56793	70
AAACTCG	105	0.0	63.33189	36
AACTCGT	95	0.0	62.630146	37
ACAACGG	105	0.0	56.665375	27
ACACCGT	25	2.3896681E-4	55.998726	27
ATGACGA	25	2.3896681E-4	55.998726	44
CCGACTT	50	9.804353E-10	55.998726	47
ACCGGAT	45	2.6990165E-8	54.4432	29
CGGATAA	65	3.6379788E-12	53.84492	31
GTACTAG	20	0.006943537	52.510788	1
ATCGTAT	200	0.0	52.498802	39
GACATCG	40	7.4748095E-7	52.498802	22
AACTCGA	20	0.006949808	52.498802	37
GAACACG	40	7.4748095E-7	52.498802	18
GCCGTCA	100	0.0	52.498802	46
CGTATGC	7155	0.0	51.263676	41
TCGTATG	7230	0.0	51.167572	40
TATGCCG	7000	0.0	51.098835	43