SRR1781042_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781042_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	274337
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	42797	15.600156012495582	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCG	7172	2.614302846499014	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	3192	1.1635324436732923	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	1239	0.4516343037942384	No Hit
ATTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	1156	0.42137954413732015	RNA PCR Primer, Index 19 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTCTT	1153	0.42028599860755206	No Hit
CTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTC	713	0.25989932090822604	RNA PCR Primer, Index 19 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACGCGATAAAATCTCGTATGCCGT	522	0.19027692217965494	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	453	0.16512537499498792	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGTTAAATCTCGTATGCCGTC	425	0.15491895005048537	No Hit
CTTATACACATCTCCGAGCCAACGAGACGCGTTAAAATCTCGTATGCCGT	365	0.13304803945512272	RNA PCR Primer, Index 19 (95% over 21bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	363	0.13231900910194394	No Hit
TTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTC	320	0.11664485650860074	RNA PCR Primer, Index 19 (95% over 22bp)
CTTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCG	319	0.11628034133201136	No Hit
CTTTACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTC	296	0.10789649227045568	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGTAAAAATCTCGTATGCCGT	279	0.10169973426843626	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACGGC	15	0.002217243	70.046524	5
AGTGGAC	15	0.0022220602	70.00821	8
CACGAGT	15	0.0022236677	69.995445	50
CACGTTA	15	0.0022236677	69.995445	30
CGACTTA	20	7.920429E-5	69.995445	48
CTCTCGA	15	0.0022236677	69.995445	37
CGAGTTA	60	0.0	64.16249	28
AGGGGGG	5280	0.0	64.16249	70
AGCCGTC	35	2.9689E-7	59.996094	45
CGACTTC	65	0.0	59.22691	48
TAACCGA	30	8.366389E-6	58.32954	11
CGAATGC	85	0.0	57.64331	41
GCCGACT	80	0.0	56.8713	46
ACGCGAA	50	9.786163E-10	55.996353	27
CCGACTT	75	0.0	55.996353	47
GCGATAA	215	0.0	55.345234	29
AAGCCGT	45	2.6948328E-8	54.440903	44
GCCGTCA	110	0.0	54.087387	46
GACCACG	130	0.0	53.842644	18
CGCGATA	215	0.0	53.717434	28