SRR1781036_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781036_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	379996
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	43362	11.411172749186834	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	6348	1.67054390046211	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	2850	0.7500078948199455	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	1447	0.38079348203665303	No Hit
ATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTCTT	1216	0.32000336845651006	TruSeq Adapter, Index 10 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTC	741	0.19500205265318582	No Hit
CTTAAACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	548	0.1442120443373088	No Hit
CATATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	470	0.12368551247907873	No Hit
CTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	419	0.11026431857177443	No Hit
CTTTACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTC	384	0.10105369530205581	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGTCCC	15	0.0022209373	70.02238	7
AGGGGGG	5010	0.0	63.218796	70
AAACTCG	110	0.0	60.450005	36
AACTCGT	85	0.0	57.642723	37
GGCTAAA	170	0.0	55.584053	32
TCTTTAT	285	0.0	54.052364	1
CGTCTTA	40	7.474846E-7	52.49605	48
CTCGAAA	20	0.0069505405	52.49605	39
TATGCCG	7020	0.0	50.60161	43
AATCTCG	7100	0.0	50.57366	36
GCTAATC	7125	0.0	50.543568	33
CGTATGC	7125	0.0	50.44533	41
GTATGCC	7050	0.0	50.435925	42
TCGTATG	7185	0.0	50.413746	40
GCCGTCT	6960	0.0	50.333855	46
CGGCTAA	7340	0.0	50.255077	31
GGCTAAT	7300	0.0	50.242798	32
TCTCGTA	7050	0.0	50.23736	38
CTCGTAT	7065	0.0	50.229767	39
ATGCCGT	7095	0.0	50.16536	44