SRR1781031_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781031_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	263115
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	50573	19.220873002299374	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	6357	2.4160538167721337	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	3054	1.1607091955988826	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTAGTATGCCGT	2280	0.8665412462231344	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	1365	0.518784561883587	No Hit
ATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTCTT	901	0.3424358170381772	TruSeq Adapter, Index 2 (95% over 21bp)
CTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	735	0.27934553332193146	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATCCTGTATCTCGTATGCCGT	696	0.2645231172681147	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGACGT	653	0.2481804534139065	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTAAGCCGT	577	0.21929574520646866	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTAGTATGCCG	418	0.158865895140908	No Hit
CTTTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	388	0.147464036637972	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	376	0.1429032932367976	No Hit
CTTTACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	365	0.13872261178572107	No Hit
TCTTAATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCC	311	0.1181992664804363	No Hit
CATATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGT	307	0.11667901868004484	No Hit
TTATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCGTC	304	0.11553883282975125	No Hit
CTTAATACACATCTCCGAGCCCACGAGACCATCCTGTATCTCGTATGCCG	274	0.10413697432681526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCAA	15	0.002223208	69.99829	27
CGAGTAT	15	0.002223208	69.99829	40
GACGTAT	35	3.6998244E-9	69.99829	46
ACGTATT	30	1.0213989E-7	69.99829	47
ATACGTC	15	0.002223208	69.99829	45
GCCGTTG	15	0.002223208	69.99829	38
AGGGGGG	5260	0.0	64.8083	70
TACCACG	25	2.3879267E-4	55.99863	18
TCTGCTT	6070	0.0	53.623074	53
CGTCTTC	6280	0.0	53.61334	48
GCCGTCT	7005	0.0	53.560432	46
CTGCTTG	6055	0.0	53.524704	54
CCGTCTT	7035	0.0	53.48128	47
GTCTTCT	6015	0.0	53.415154	49
CTTGAAA	7440	0.0	53.25139	57
AAGCTTG	250	0.0	53.198696	54
TTGAAAA	7625	0.0	53.1069	58
TGCCGTC	7470	0.0	53.08438	45
ATGCCGT	7855	0.0	53.066814	44
TATGCCG	7875	0.0	53.065372	43