SRR1781030_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781030_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	425876
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	47404	11.130939522302267	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCG	6471	1.5194563675811739	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	3289	0.7722905258807728	No Hit
ATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTCTT	1683	0.39518545304266967	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	1422	0.33390000845316475	No Hit
CTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTC	1029	0.24161962637011714	RNA PCR Primer, Index 19 (95% over 22bp)
CTTAAACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	551	0.1293803830222882	No Hit
CTTTACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGTC	537	0.12609304116691242	No Hit
CATATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCGT	531	0.1246841803717514	RNA PCR Primer, Index 19 (95% over 21bp)
TCTTAATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCC	443	0.1040208887093896	No Hit
CTTTATACACATCTCCGAGCCCACGAGACGCGTTAAAATCTCGTATGCCG	434	0.10190759751664805	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCGTC	50	1.4551915E-11	62.998096	45
AGGGGGG	5765	0.0	62.530636	70
CATCTCG	40	1.0652002E-8	61.24815	36
ACGTATG	65	0.0	59.228977	40
ACGCGTA	145	0.0	55.515564	27
CGCGTAA	150	0.0	53.665047	28
ACGCGAA	40	7.474682E-7	52.498417	27
TGACGAC	20	0.0069498764	52.498417	45
GCCGACT	80	0.0	52.498417	46
AACTCGA	40	7.474682E-7	52.498417	37
TGCCGAC	80	0.0	52.498417	45
AAGCCGT	60	8.367351E-11	52.49841	44
CCGACTT	60	8.367351E-11	52.49841	47
GACGCGA	270	0.0	50.554028	26
GCCGTCT	7965	0.0	50.268414	46
CCGTCTT	7920	0.0	50.244698	47
TATGCCG	8045	0.0	50.160076	43
CGTCTTC	7960	0.0	50.124115	48
TTTCGAC	35	2.0856145E-5	49.99849	28
ATTTGCG	35	2.0856145E-5	49.99849	31