SRR1781022_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781022_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	46108
Sequences flagged as poor quality	0
Sequence length	76
%GC	91

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	34826	75.53136115207772	No Hit
CTTATACACATCTGACGCTGCCGACGACGTTGCTGGTGTAGATCTCGGTG	2067	4.482953066712935	No Hit
TCTTATACACATCTGACGCTGCCGACGACGTTGCTGGTGTAGATCTCGGT	218	0.4728029842977357	No Hit
CTCTTATACACATCTGACGCTGCCGACGACGTTGCTGGTGTAGATCTCGG	132	0.2862843758133079	No Hit
ATACACATCTGACGCTGCCGACGACGTTGCTGGTGTAGATCTCGGTGGTC	123	0.26676498655330966	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	77	0.1669992192244296	No Hit
TCTTTATACACATCTGACGCTGCCGACGACGTTGCTGGTGTAGATCTCGG	66	0.14314218790665395	No Hit
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	48	0.10410340938665742	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTTAT	30	1.003591E-7	69.99024	1
CTTTATA	35	2.916113E-7	59.99163	2
TTTATAC	35	2.916113E-7	59.99163	3
AAAAAGG	215	0.0	58.660103	70
GCTGGTG	350	0.0	52.992607	32
TGCTGGT	350	0.0	52.992607	31
CTGGTGT	350	0.0	52.992607	33
CGTTGCT	350	0.0	52.992607	28
TGGTGTA	350	0.0	52.992607	34
GTTGCTG	350	0.0	52.992607	29
TTGCTGG	350	0.0	52.992607	30
GAAGAAG	20	0.0069138044	52.492683	68
GTAGATC	360	0.0	52.49268	38
GTGTAGA	360	0.0	52.49268	36
GTATCAT	360	0.0	52.49268	57
CATTAAA	360	0.0	52.49268	61
TCTCGGT	360	0.0	52.49268	43
CGTATCA	360	0.0	52.49268	56
TATCATT	360	0.0	52.49268	58
TGTAGAT	360	0.0	52.49268	37