SRR1781018_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781018_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397443
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	16244	4.087126959085957	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	9430	2.372667275559011	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4212	1.0597746091892422	No Hit
CATAAACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	3368	0.8474171139006096	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	2718	0.6838716495195537	No Hit
CAAATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	1328	0.3341359641508342	No Hit
CTTAAACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	1129	0.28406589120955705	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	844	0.2123574952886326	No Hit
CAAAAACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	804	0.20229315901902917	No Hit
CACTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	750	0.1887063050550645	No Hit
CTAATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	427	0.10743678967801672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACTTC	75	0.0	65.33204	48
AGGGGGG	4270	0.0	63.203423	70
CCGACTT	95	0.0	62.630344	47
GCCGACA	45	3.8380676E-10	62.220993	46
TGCCGAC	130	0.0	59.2296	45
TCGAAAG	30	8.3647865E-6	58.339523	40
GCCGACT	115	0.0	57.824944	46
CATATAC	2395	0.0	57.577152	1
GCCGTAT	55	3.6379788E-11	57.271595	46
ATATACA	2425	0.0	56.720528	2
CGTAAGA	25	2.389361E-4	55.998894	41
ATATCGT	95	0.0	55.269024	37
CGTCTAC	70	0.0	54.998913	48
ATCGTAT	90	0.0	54.450214	39
GCCGTCT	4660	0.0	54.226395	46
CGTCTTC	4715	0.0	54.113457	48
CCGTCTT	4620	0.0	54.014084	47
TATGCCG	4975	0.0	53.81803	43
TCTTCTG	4640	0.0	53.705837	50
GTCTTCT	4660	0.0	53.700653	49