SRR1781014_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781014_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	299657
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	40866	13.63759231387887	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	6187	2.0646939667686723	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	3005	1.0028132164441343	No Hit
CACTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	2288	0.7635396469963992	No Hit
CAAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	2246	0.749523622007829	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2229	0.7438504690362647	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	853	0.28465879322024845	No Hit
AAACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	688	0.22959583790800814	RNA PCR Primer, Index 48 (95% over 23bp)
ACTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	612	0.20423350697630957	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	562	0.18754776294229736	No Hit
CAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	444	0.14816940702202852	RNA PCR Primer, Index 48 (95% over 21bp)
CATATACAAATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	353	0.11780135288012629	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	329	0.1097921957438004	RNA PCR Primer, Index 48 (95% over 23bp)
CATAAACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	310	0.10345161301087576	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATTG	15	0.0022233373	69.999664	58
CATATAC	4840	0.0	67.19064	1
ATATACA	4885	0.0	66.50004	2
AGGGGGG	6085	0.0	64.938065	70
GCCGTAT	45	3.8380676E-10	62.221924	46
TCGTCTA	35	2.9685907E-7	59.999714	31
TGACGAC	30	8.365281E-6	58.333054	45
GACGACT	30	8.365281E-6	58.333054	46
CAAATAC	605	0.0	57.282017	1
TGCCGTA	55	3.6379788E-11	57.272453	45
AAGGGGG	6965	0.0	56.33139	69
AATCTCG	7105	0.0	56.10811	36
TATGCCG	7040	0.0	56.02956	43
CCGTCTT	6905	0.0	56.009872	47
CGTCTTC	6980	0.0	56.009758	48
ACATTCG	50	9.786163E-10	55.999733	27
AATAACG	25	2.3882315E-4	55.999733	36
GCCGTCT	6945	0.0	55.98966	46
CGTATGC	7130	0.0	55.911373	41
GTATGCC	7065	0.0	55.880833	42