SRR1781012_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781012_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	287417
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	19500	6.784567370753991	No Hit
CTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	3193	1.110929416144487	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	1509	0.5250211365368088	No Hit
CAAATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGT	1399	0.48674921803511967	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1150	0.40011551160856873	No Hit
CACTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	1135	0.39489661363106565	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCC	407	0.14160609845624997	No Hit
AAACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCGTCTT	358	0.12455769839640662	RNA PCR Primer, Index 47 (95% over 21bp)
ACTTATACACATCTCCGAGCCCACGAGACAATGGTAGATCTCGTATGCCG	296	0.10298625342272726	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACTCGT	15	0.0022224353	70.00609	37
AAAACGG	20	7.92193E-5	69.99391	67
GCACGTG	15	0.0022239697	69.993904	9
TGCCTTA	15	0.0022239697	69.993904	11
ATATACA	2525	0.0	63.063824	2
CATATAC	2540	0.0	62.55361	1
AGGGGGG	3230	0.0	61.976036	70
CCGACTT	40	1.0626536E-8	61.25533	47
TGCCGAC	40	1.0626536E-8	61.25533	45
ACGTATG	70	0.0	60.005222	40
CGACTTC	55	3.6379788E-11	57.27771	48
GGATCCA	25	2.3869841E-4	56.00487	45
CACGTAT	70	0.0	55.004787	39
CGTATGA	115	0.0	54.787376	41
CAGCTTG	45	2.6922862E-8	54.44918	54
CGTCTTC	3705	0.0	54.22874	48
GCCGTCT	3670	0.0	54.17365	46
CCGTCTT	3645	0.0	54.16109	47
TATGCCG	3730	0.0	53.959118	43
TGCCGTC	3695	0.0	53.90185	45