SRR1781011_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781011_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	94496
Sequences flagged as poor quality	0
Sequence length	76
%GC	83

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	59402	62.86192008127328	No Hit
CTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGTG	1262	1.335506264815442	No Hit
TCTTATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGT	124	0.13122248560785643	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	120	0.12698950220115138	No Hit
ATACACATCTGACGCTGCCGACGAACATAAGGGTGTAGATCTCGGTGGTC	110	0.11640704368438876	Illumina Single End PCR Primer 1 (95% over 22bp)
GTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	98	0.10370809346427362	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCCCCG	15	0.0022123787	70.049286	32
TAGAACA	15	0.0022170357	70.012184	39
TGGCGGC	15	0.0022170357	70.012184	19
AATGGAT	15	0.0022170357	70.012184	65
GCGCGTG	15	0.0022217	69.97512	6
CTATATG	15	0.0022217	69.97512	61
TATGCGC	15	0.0022217	69.97512	3
CGCGTCG	15	0.0022217	69.97512	7
GAGATGC	15	0.0022217	69.97512	55
AGATGCT	15	0.0022217	69.97512	56
CTTGTGC	25	2.3839631E-4	55.9801	1
TGCGCGT	45	2.6757334E-8	54.425095	5
ATAGGGG	20	0.0069131064	52.536964	30
TCAGGGG	20	0.0069131064	52.536964	29
CAGGGGG	20	0.0069131064	52.536964	30
CCTCAGG	20	0.0069131064	52.536964	27
GGGGGAC	20	0.0069131064	52.536964	32
CTCAGGG	20	0.0069131064	52.536964	28
TGCGGGC	20	0.0069276164	52.509136	19
CCCACCT	20	0.0069276164	52.509136	23