SRR1781010_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781010_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	254738
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	32363	12.704425723684725	No Hit
CTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	4855	1.9058797666622176	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	2317	0.9095619813298369	No Hit
CACTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	2179	0.8553886738531354	No Hit
CAAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGT	1845	0.7242735673515533	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1802	0.7073934787899724	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	768	0.3014862329138173	No Hit
AAACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	558	0.21904859110144542	RNA PCR Primer, Index 42 (95% over 22bp)
ACTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCG	523	0.20530898413271673	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCC	415	0.16291248262921118	No Hit
CAATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTC	348	0.1366109492890735	No Hit
ATACACATCTCCGAGCCCACGAGACATCACTCGATCTCGTATGCCGTCTT	256	0.10049541097127246	RNA PCR Primer, Index 42 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATCC	15	0.002223109	69.99843	41
TCGTATC	15	0.002223109	69.99843	40
CTCGAGG	15	0.002223109	69.99843	2
TCGAGGG	15	0.002223109	69.99843	3
CATATAC	3765	0.0	64.7927	1
AGGGGGG	4595	0.0	64.362	70
ATATACA	3795	0.0	64.28051	2
AACTCGT	40	1.0628355E-8	61.248627	37
TGCCGAC	35	2.967172E-7	59.998653	45
CAAATAC	370	0.0	56.75548	1
ATCGATC	25	2.3877578E-4	55.99874	33
ATCTCGT	5380	0.0	55.100994	37
CCGTCTT	5370	0.0	54.95369	47
CGTCTTC	5465	0.0	54.895184	48
CTCGTAT	5455	0.0	54.8567	39
TCTCGTA	5455	0.0	54.8567	38
TATGCCG	5385	0.0	54.85485	43
AAGGGGG	5355	0.0	54.83537	69
GATCTCG	5435	0.0	54.80098	36
ATGCCGT	5405	0.0	54.71663	44