SRR1781008_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781008_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	302313
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	38154	12.620694445822709	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	6140	2.031007598085428	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	2910	0.9625785196137777	No Hit
CAAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	2335	0.7723782966660382	No Hit
CACTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	2333	0.7717167306731765	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2163	0.7154836212799318	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	886	0.2930737348377344	No Hit
AAACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	694	0.22956339952301094	Illumina PCR Primer Index 9 (95% over 21bp)
ACTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCG	584	0.19317726991561726	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCC	562	0.1859000439941385	No Hit
CAATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTC	469	0.15513722532606933	No Hit
ATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGTCTT	389	0.12867458561160122	Illumina PCR Primer Index 9 (95% over 21bp)
CATATACAAATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	323	0.10684290784716502	No Hit
CATATACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGACGT	309	0.10221194589713312	No Hit
CATAAACACATCTCCGAGCCCACGAGACTTGCTAAGATCTCGTATGCCGT	309	0.10221194589713312	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAATGCG	15	0.0022225848	70.00579	46
CCGACTT	50	0.0	70.00579	47
GCCGTAT	20	7.9159385E-5	70.00578	46
GAAGTGC	15	0.0022240437	69.99421	6
CATATAC	4375	0.0	67.27444	1
ATATACA	4390	0.0	67.04457	2
TGCCGAC	60	0.0	64.171974	45
AGGGGGG	5830	0.0	63.871216	70
ACTTGCA	55	0.0	63.652157	27
GCCGACT	55	0.0	63.641624	46
CGTCTTA	50	1.4551915E-11	63.005207	48
AAGCCGT	50	1.4551915E-11	63.005207	44
AGCCGTC	45	3.8380676E-10	62.227367	45
GTATTCT	40	1.0630174E-8	61.255062	49
CACGTAT	75	0.0	60.671688	39
CAGCTTG	110	0.0	60.45954	54
CGTCTAC	70	0.0	60.004963	48
ACGTATG	65	0.0	59.235672	40
CAAATAC	575	0.0	59.038597	1
CGAATGC	60	1.8189894E-12	58.338158	41