SRR1781006_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781006_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	310134
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	37253	12.01190453158957	No Hit
CTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	6335	2.0426654284922003	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3000	0.9673238019694712	No Hit
TCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	2978	0.9602300940883619	No Hit
CACTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	2280	0.7351660894967982	No Hit
CAAATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	2132	0.6874447819329709	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	933	0.30083770241250557	No Hit
ACTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCG	678	0.2186151792451005	No Hit
AAACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	529	0.1705714304139501	Illumina PCR Primer Index 10 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCC	496	0.15993086859228592	No Hit
CATATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGACGT	405	0.13058871326587862	No Hit
CAATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTC	381	0.12285012285012285	Illumina PCR Primer Index 10 (95% over 21bp)
ATACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGTCTT	334	0.10769538328593448	Illumina PCR Primer Index 10 (95% over 23bp)
CATAAACACATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	333	0.10737294201861132	No Hit
CATATACAAATCTCCGAGCCCACGAGACAGTAGATTATCTCGTATGCCGT	323	0.10414852934537974	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGCC	15	0.0022226574	70.005646	46
TACGTCA	15	0.0022226574	70.005646	57
CATATAC	4390	0.0	66.64611	1
ATATACA	4435	0.0	65.89097	2
AGGGGGG	5745	0.0	64.633606	70
AATCTCG	65	0.0	64.6206	36
CAAATAC	625	0.0	59.355217	1
AAGGGGG	6590	0.0	56.080456	69
AAAACGG	25	2.3892579E-4	55.995483	67
CGAGAAC	25	2.3892579E-4	55.995483	15
CCGTCTT	6370	0.0	55.773724	47
GCCGTCT	6415	0.0	55.709873	46
CGTCTTC	6475	0.0	55.626106	48
TATGCCG	6660	0.0	55.499966	43
ATGCCGT	6685	0.0	55.344772	44
TGCCGTC	6660	0.0	55.342297	45
GTATGCC	6715	0.0	55.097515	42
CGTATGC	6790	0.0	55.055984	41
GTCTTCT	6470	0.0	55.01989	49
TCTTCTG	6460	0.0	54.987823	50