SRR1781005_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781005_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	295616
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	32526	11.002787399870103	No Hit
CTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	6092	2.060781554449015	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	2582	0.8734303961896515	No Hit
CACTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	2167	0.7330455726347694	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1844	0.6237822039402467	No Hit
CAAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	1693	0.5727024247672656	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	819	0.2770486035938515	No Hit
AAACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	527	0.1782718120805369	RNA PCR Primer, Index 24 (95% over 23bp)
ACTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCG	507	0.17150627841524138	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCC	495	0.1674469582160641	No Hit
CAATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTC	382	0.1292216930071444	RNA PCR Primer, Index 24 (95% over 21bp)
CATATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGACGT	336	0.11366096557696471	No Hit
ATACACATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGTCTT	323	0.10926336869452262	RNA PCR Primer, Index 24 (95% over 23bp)
CATATACAAATCTCCGAGCCCACGAGACGTGATAGCATCTCGTATGCCGT	300	0.10148300497943277	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAA	15	0.0022224556	70.00643	39
TCGAAAG	15	0.0022224556	70.00643	40
CCGACGA	15	0.0022239473	69.99458	21
CCTATCG	15	0.0022239473	69.99458	15
ATATACA	3990	0.0	65.784386	2
CATATAC	4000	0.0	65.53243	1
AGGGGGG	5060	0.0	65.164085	70
CCGACTT	80	0.0	61.245266	47
CAACTCG	60	1.8189894E-12	58.33869	36
CTCTCGT	30	8.360212E-6	58.33869	37
TGCCGAC	90	0.0	58.32882	45
TCTTCTG	5485	0.0	57.10589	50
AAGGGGG	5790	0.0	57.069145	69
CGTCTTC	5565	0.0	56.850952	48
ACGAGAT	105	0.0	56.671867	27
CCGTCTT	5545	0.0	56.614197	47
GTCTTCT	5530	0.0	56.51462	49
GCCGTCT	5575	0.0	56.49787	46
TATGCCG	5715	0.0	56.461075	43
CTTCTGC	5610	0.0	56.457306	51