SRR1781002_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781002_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	203238
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	40340	19.848650350820222	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	4455	2.1920113364626697	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3153	1.551383107489741	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	2316	1.139550674578573	No Hit
CATATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGT	2230	1.0972357531563979	No Hit
ATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCTT	1739	0.8556470738739802	RNA PCR Primer, Index 48 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCC	957	0.47087650931420305	No Hit
CTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	701	0.34491581298772866	No Hit
CTTTACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTC	469	0.2307639319418613	RNA PCR Primer, Index 48 (95% over 21bp)
CTTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	304	0.14957832688768832	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGACGT	282	0.13875357954713194	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCAATATCGTATGCCGT	273	0.13432527381690432	No Hit
CTTAATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCG	249	0.12251645853629735	No Hit
CTTATACACATCTCCGAGCCCACGAGACTATCGTCAATCTCGTATGCCGT	242	0.11907222074612031	No Hit
TATACACATCTCCGAGCCCACGAGACTTTCGTCAATCTCGTATGCCGTCT	214	0.10529526958541217	RNA PCR Primer, Index 48 (95% over 22bp)
CTTATACACATCTCCGAGCCCACGAGACTTTCGTCATCTCGTATGCCGTC	206	0.10135899782520985	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGTA	15	0.0022189165	70.02659	38
TCGTCTA	15	0.0022210847	70.00935	31
CTTTCGA	45	5.456968E-12	70.00935	28
ACGCGGC	15	0.0022232542	69.99213	22
AGGGGGG	5025	0.0	62.485962	70
CGAATGC	75	0.0	60.674774	41
CGTCTTA	30	8.348774E-6	58.341125	48
TTCGTAA	30	8.348774E-6	58.341125	30
TCGAATG	85	0.0	57.668953	40
TCTTTAT	190	0.0	57.09884	1
TACGTCA	25	2.384764E-4	56.00748	30
CGACAAT	50	9.767973E-10	55.993702	32
CGTATGA	90	0.0	54.451717	41
GTATGAC	85	0.0	53.536564	42
AAGGGGG	5955	0.0	52.727444	69
ACGTATG	20	0.0069334204	52.51994	40
AGCCGTC	40	7.4467425E-7	52.507015	45
GGTCACC	20	0.0069401753	52.507015	31
CCGCTGT	20	0.0069401753	52.507015	69
ACTTACG	20	0.0069401753	52.507015	27