SRR1781001_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1781001_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	390706
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	28389	7.266077306209784	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCG	3458	0.8850644730308723	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	2140	0.5477264234488337	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2090	0.5349290771065712	No Hit
CATATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGT	1783	0.45635337056507963	No Hit
ATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTCTT	1232	0.3153266138733472	TruSeq Adapter, Index 2 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCC	756	0.19349587669500853	No Hit
CTATACACATCTCCGAGCCCACGAGACGAGCACGTATCTCGTATGCCGTC	524	0.13411618966691066	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	3825	0.0	61.579334	70
CGTCTAC	55	3.6379788E-11	57.27786	48
AAGTATC	75	0.0	55.99785	33
TGACGCG	20	0.0069461577	52.504704	37
AACTCGT	80	0.0	52.504704	37
TTACACG	20	0.0069461577	52.504704	43
TGCCGGA	20	0.0069461577	52.504704	46
AACGTAT	40	7.4735E-7	52.497982	32
TTCCGCG	20	0.006949675	52.497982	2
TTAAGCA	20	0.006949675	52.497982	52
GGTTACA	20	0.006949675	52.497982	1
CTTTATA	165	0.0	50.90714	2
CGTCTTC	4730	0.0	50.025623	48
CTTGAAA	4810	0.0	49.987682	57
CTCGTAT	4975	0.0	49.88387	39
TCGTATG	4975	0.0	49.88387	40
GCCGTCT	4710	0.0	49.866463	46
CCGTCTT	4665	0.0	49.822254	47
TATGCCG	4785	0.0	49.816376	43
CGTATGC	4880	0.0	49.779053	41